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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:132.8 nTPM
GTEx:75.4 nTPM
FANTOM5:99.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA024517
Glial cells Low
Neuronal cells Low


HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.8
Sample id Sample description nTPM
Hippocampus
nTPM: 132.8
2529 Female, age 94, left hemisphere 174.0
1898 Male, age 80, left hemisphere 138.8
2621 Female, age 67, right hemisphere 135.5
2148 Female, age 91, left hemisphere 122.6
1911 Female, age 85, right hemisphere 120.8
1855 Male, age 76, left hemisphere 105.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 75.4
Samples: 197

Max nTPM: 146.1
Min nTPM: 21.2
Std nTPM: 21.2
Median nTPM: 74.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 146.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 139.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 135.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 131.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 130.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 124.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 119.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 117.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 115.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 115.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 112.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 111.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 108.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 108.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 108.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 106.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 105.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 104.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 103.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 103.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 102.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 102.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 102.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 100.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 100.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 100.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 98.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 98.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 98.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 97.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 97.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 97.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 95.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 94.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 93.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 93.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 93.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 93.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 91.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 90.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 90.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 90.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 90.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 89.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 88.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 88.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 88.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 88.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 88.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 87.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 86.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 86.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 86.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 85.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 85.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 85.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 84.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 84.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 84.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 84.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 83.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 83.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 82.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 82.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 82.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 82.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 82.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 82.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 81.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 81.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 80.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 80.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 79.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 79.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 79.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 79.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 78.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 78.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 78.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 78.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 77.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 77.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 77.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 77.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 77.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 76.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 76.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 76.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 76.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 75.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 75.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 75.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 75.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 75.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 75.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 74.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 74.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 74.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 74.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 73.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 73.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 73.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 73.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 72.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 72.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 70.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 70.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 69.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 69.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 69.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 69.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 69.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 69.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 68.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 68.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 68.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 68.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 68.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 67.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 67.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 67.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 66.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 66.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 66.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 66.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 65.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 65.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 65.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 64.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 64.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 64.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 64.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 64.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 64.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 64.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 63.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 63.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 62.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 62.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 62.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 61.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 61.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 61.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 61.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 61.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 60.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 60.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 60.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 60.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 60.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 60.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 60.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 59.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 59.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 59.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 59.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 58.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 58.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 57.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 56.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 56.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 56.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 56.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 56.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 56.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 56.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 55.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 55.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 54.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 54.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 54.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 53.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 53.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 52.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 52.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 52.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 52.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 52.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 51.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 50.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 50.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 50.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 49.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 47.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 47.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 45.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 43.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 43.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 41.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 41.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 40.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 39.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 38.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 37.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 37.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 32.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 21.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 99.8
FF:10153-102I9 76 years, female 122.7
FF:10169-103B7 60 years, female 76.8

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