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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
31.3
nTPM
GTEx:
11.4
nTPM
FANTOM5:
9.2
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA041680
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 31.3
1855
Male, age 76, left hemisphere
43.8
2148
Female, age 91, left hemisphere
35.3
1898
Male, age 80, left hemisphere
32.1
2529
Female, age 94, left hemisphere
28.9
2621
Female, age 67, right hemisphere
26.0
1911
Female, age 85, right hemisphere
21.9
HIPPOCAMPUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 11.4
Samples: 197
Max nTPM: 24.8
Min nTPM: 3.6
Std nTPM: 3.3
Median nTPM: 11.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
24.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
22.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
19.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
18.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
18.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
17.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
17.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
17.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
17.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
16.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
16.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
16.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
16.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
15.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
15.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
15.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
15.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
15.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
15.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
15.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
15.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
15.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
15.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
15.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
15.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
15.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
14.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
14.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
14.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
14.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
14.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
14.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
14.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
14.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
14.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
14.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
14.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
14.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
14.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
14.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
13.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
13.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
13.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
13.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
13.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
13.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
13.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
13.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
13.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
13.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
13.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
13.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
13.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
13.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
13.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
13.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
13.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
13.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
12.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
12.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
12.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
12.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
12.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
12.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
12.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
12.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
12.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
12.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
12.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
12.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
12.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
12.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
12.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
12.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
12.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
12.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
12.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
12.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
12.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
12.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
12.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
11.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
11.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
11.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
11.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
11.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
11.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
11.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
11.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
11.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
11.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
11.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
11.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
11.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
11.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
11.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
11.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
11.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
11.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
11.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
11.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
11.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
11.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
11.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
11.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
10.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
10.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
10.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
10.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
10.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
10.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
10.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
10.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
10.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
10.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
10.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
10.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
9.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
9.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
9.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
9.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
9.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
9.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
9.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
9.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
9.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
9.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
9.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
9.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
9.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
9.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
9.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
9.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
9.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
9.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
9.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
9.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
9.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
9.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
9.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
9.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
9.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
9.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
9.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
9.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
9.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
9.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
9.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
8.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
8.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
8.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
8.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
8.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
8.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
8.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
8.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
8.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
8.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
8.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
8.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
8.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
7.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
7.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
7.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
7.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
7.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
7.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
7.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
7.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
7.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
7.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
7.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
7.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
7.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
7.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
6.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
6.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
6.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
6.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
6.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
6.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
6.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
6.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
6.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
6.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
6.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
6.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
5.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
5.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
5.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
3.6
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HIPPOCAMPUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
