We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RAC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RAC1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:170.6 nTPM
FANTOM5:177.8 Scaled Tags Per Million
Pig:216.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047820Antibody CAB035994
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 170.6
Samples: 246

Max nTPM: 337.1
Min nTPM: 110.1
Std nTPM: 35.7
Median nTPM: 161.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 337.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 326.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 284.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 275.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 264.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 260.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 260.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 259.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 252.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 246.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 244.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 242.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 241.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 240.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 239.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 236.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 236.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 234.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 227.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 225.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 225.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 224.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 223.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 221.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 219.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 218.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 216.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 216.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 214.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 213.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 211.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 210.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 208.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 208.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 207.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 207.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 207.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 205.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 203.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 203.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 202.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 201.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 200.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 197.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 197.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 196.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 195.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 194.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 194.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 194.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 194.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 193.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 193.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 193.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 192.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 192.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 190.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 189.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 189.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 189.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 189.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 187.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 187.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 186.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 186.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 185.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 185.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 184.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 183.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 182.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 182.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 182.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 181.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 180.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 178.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 178.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 177.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 176.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 176.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 175.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 175.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 173.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 173.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 173.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 172.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 172.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 172.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 172.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 171.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 171.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 171.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 171.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 171.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 171.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 170.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 170.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 170.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 170.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 169.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 168.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 167.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 167.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 167.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 166.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 166.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 166.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 165.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 165.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 165.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 165.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 164.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 164.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 164.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 164.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 164.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 164.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 163.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 163.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 163.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 162.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 161.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 161.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 161.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 160.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 160.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 159.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 159.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 159.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 159.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 159.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 158.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 158.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 158.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 158.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 158.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 158.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 157.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 157.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 157.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 157.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 156.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 156.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 155.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 155.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 155.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 155.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 155.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 155.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 154.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 154.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 154.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 154.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 153.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 153.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 153.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 153.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 152.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 152.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 151.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 151.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 150.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 150.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 150.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 150.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 149.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 149.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 149.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 149.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 149.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 149.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 149.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 148.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 148.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 148.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 147.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 147.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 147.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 147.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 146.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 146.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 146.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 146.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 146.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 146.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 146.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 145.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 145.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 144.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 143.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 143.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 143.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 143.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 143.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 142.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 142.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 142.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 141.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 141.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 141.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 141.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 140.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 140.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 139.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 139.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 139.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 139.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 139.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 139.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 139.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 138.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 138.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 138.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 137.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 136.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 136.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 136.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 135.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 135.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 135.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 134.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 133.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 133.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 132.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 132.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 131.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 131.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 131.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 130.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 130.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 130.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 130.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 129.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 128.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 127.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 126.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 122.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 121.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 120.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 114.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 110.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

177.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 177.8
FF:10164-103B2 76 years, female 177.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.7
Pig sample Sample description nTPM
Caudate
nTPM: 216.7
Samples: 4

Max nTPM: 239.0
Min nTPM: 189.2
Sample A Female 218.0
Sample B Female 220.6
Sample C Male 239.0
Sample D Male 189.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org