We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CCM2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CCM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:127.1 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:49.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA020273Antibody HPA021669
Glial cells LowLow
Neuronal cells LowLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 127.1
Samples: 246

Max nTPM: 294.2
Min nTPM: 31.4
Std nTPM: 45.3
Median nTPM: 124.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 294.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 264.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 251.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 243.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 230.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 223.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 216.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 216.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 215.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 209.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 209.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 208.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 206.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 206.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 204.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 203.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 203.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 197.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 194.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 193.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 193.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 191.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 190.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 190.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 189.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 189.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 188.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 185.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 184.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 184.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 182.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 182.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 181.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 180.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 180.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 179.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 178.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 177.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 177.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 175.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 174.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 173.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 172.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 172.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 172.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 171.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 169.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 164.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 163.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 161.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 161.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 160.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 159.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 159.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 158.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 156.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 156.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 155.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 154.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 154.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 153.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 152.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 151.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 151.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 150.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 150.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 150.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 149.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 148.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 148.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 146.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 146.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 144.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 144.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 144.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 144.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 143.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 143.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 143.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 142.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 142.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 142.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 142.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 141.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 141.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 140.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 139.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 139.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 138.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 138.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 137.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 137.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 137.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 136.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 136.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 135.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 135.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 135.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 135.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 134.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 134.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 134.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 134.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 134.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 133.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 133.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 132.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 131.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 131.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 130.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 129.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 128.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 128.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 127.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 126.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 125.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 124.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 124.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 124.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 124.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 124.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 123.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 123.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 123.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 123.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 123.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 123.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 122.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 122.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 122.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 121.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 121.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 120.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 118.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 118.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 117.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 117.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 116.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 115.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 115.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 114.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 111.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 111.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 111.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 111.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 110.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 110.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 110.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 109.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 109.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 107.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 107.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 106.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 106.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 105.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 103.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 101.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 100.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 98.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 97.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 97.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 96.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 96.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 96.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 96.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 95.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 95.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 94.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 93.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 93.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 93.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 93.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 93.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 93.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 92.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 92.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 91.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 90.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 90.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 90.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 90.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 90.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 89.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 89.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 89.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 89.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 89.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 88.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 87.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 87.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 87.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 86.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 86.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 84.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 82.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 82.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 81.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 80.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 80.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 80.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 79.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 79.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 77.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 75.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 75.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 74.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 74.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 73.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 72.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 72.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 71.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 71.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 70.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 70.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 67.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 65.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 65.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 64.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 63.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 62.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 59.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 59.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 58.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 58.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 56.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 55.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 52.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 52.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 50.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 48.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 40.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 36.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 31.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.8
FF:10164-103B2 76 years, female 71.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.2
Pig sample Sample description nTPM
Caudate
nTPM: 49.2
Samples: 4

Max nTPM: 67.0
Min nTPM: 27.8
Sample A Female 27.8
Sample B Female 53.6
Sample C Male 67.0
Sample D Male 48.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org