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STXBP1
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  • STXBP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:59.0 nTPM
FANTOM5:252.3 Scaled Tags Per Million
Pig:183.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008209Antibody HPA023483Antibody CAB034434
Glial cells Not detectedLowHigh
Neuronal cells Not detectedLowHigh






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.0
Samples: 246

Max nTPM: 359.2
Min nTPM: 7.1
Std nTPM: 44.5
Median nTPM: 47.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 359.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 180.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 152.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 148.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 147.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 146.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 145.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 141.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 141.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 140.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 140.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 139.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 137.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 136.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 133.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 132.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 131.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 126.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 125.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 125.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 124.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 124.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 123.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 123.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 122.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 122.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 122.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 119.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 119.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 118.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 118.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 115.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 112.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 111.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 110.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 107.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 106.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 104.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 103.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 102.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 102.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 100.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 100.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 100.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 99.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 99.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 99.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 96.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 94.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 94.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 93.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 93.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 92.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 89.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 88.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 87.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 87.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 87.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 87.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 86.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 85.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 84.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 84.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 84.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 84.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 84.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 84.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 82.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 82.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 82.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 80.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 79.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 79.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 78.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 78.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 77.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 76.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 76.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 76.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 76.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 75.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 74.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 73.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 73.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 73.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 72.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 72.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 71.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 70.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 70.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 70.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 68.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 68.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 67.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 66.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 66.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 65.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 63.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 63.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 60.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 59.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 58.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 57.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 57.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 56.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 56.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 56.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 56.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 54.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 54.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 54.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 54.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 54.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 53.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 53.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 53.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 53.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 50.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 48.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 48.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 48.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 46.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 46.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 45.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 45.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 45.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 43.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 42.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 41.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 41.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 41.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 41.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 41.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 41.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 40.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 39.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 38.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 38.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 37.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 36.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 36.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 36.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 36.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 34.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 34.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 33.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 33.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 32.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 32.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 31.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 31.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 31.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 31.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 31.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 30.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 30.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 30.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 30.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 29.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 29.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 28.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 28.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 28.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 27.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 26.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 25.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 25.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 25.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 25.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 24.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 24.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 24.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 24.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 23.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 23.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 23.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 23.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 22.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 22.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 22.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 21.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 21.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 21.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 21.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 21.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 20.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 20.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 20.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 20.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 20.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 20.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 19.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 19.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 19.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 19.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 18.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 18.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 18.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 17.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 16.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 16.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 16.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 16.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 16.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 16.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 16.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 15.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 15.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 15.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 15.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 15.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 14.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 14.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 14.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 13.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 13.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 13.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 12.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 12.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 12.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 12.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 12.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 12.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 12.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 11.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 11.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 11.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 10.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 10.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 10.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 10.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 9.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 8.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 8.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 7.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 7.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 252.3
FF:10164-103B2 76 years, female 252.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
Pig sample Sample description nTPM
Caudate
nTPM: 183.7
Samples: 4

Max nTPM: 204.4
Min nTPM: 169.7
Sample A Female 172.2
Sample B Female 188.5
Sample C Male 204.4
Sample D Male 169.7

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