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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:235.0 nTPM
FANTOM5:264.0 Scaled Tags Per Million
Pig:288.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043640Antibody HPA046280Antibody CAB015339
Glial cells Not detectedLowMedium
Neuronal cells Not detectedLowMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 235.0
Samples: 246

Max nTPM: 478.2
Min nTPM: 73.1
Std nTPM: 79.9
Median nTPM: 232.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 478.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 471.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 460.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 435.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 429.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 417.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 411.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 406.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 406.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 405.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 399.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 380.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 374.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 374.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 364.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 364.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 363.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 361.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 358.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 358.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 354.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 353.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 352.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 351.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 347.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 333.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 332.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 331.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 330.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 325.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 323.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 321.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 320.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 316.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 315.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 312.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 310.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 310.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 309.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 309.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 308.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 307.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 307.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 303.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 300.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 300.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 299.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 295.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 295.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 294.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 293.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 292.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 291.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 290.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 290.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 288.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 287.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 287.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 285.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 284.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 283.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 282.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 282.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 279.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 279.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 278.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 278.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 277.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 276.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 274.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 274.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 273.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 273.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 272.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 271.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 270.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 267.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 267.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 263.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 263.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 261.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 261.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 260.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 260.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 259.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 258.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 258.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 258.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 257.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 257.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 256.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 255.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 255.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 254.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 253.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 253.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 252.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 252.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 249.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 249.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 249.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 248.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 248.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 248.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 247.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 247.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 247.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 245.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 245.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 244.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 241.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 241.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 240.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 238.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 238.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 238.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 238.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 237.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 237.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 237.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 234.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 233.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 233.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 232.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 231.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 230.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 230.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 228.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 227.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 226.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 224.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 223.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 223.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 222.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 222.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 221.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 221.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 220.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 220.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 218.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 218.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 218.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 217.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 215.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 215.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 214.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 213.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 212.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 211.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 211.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 210.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 210.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 209.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 208.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 207.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 206.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 206.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 205.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 204.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 202.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 201.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 201.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 200.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 200.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 200.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 199.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 197.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 193.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 193.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 191.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 190.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 189.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 189.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 188.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 186.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 186.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 185.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 185.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 184.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 183.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 183.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 182.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 179.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 178.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 178.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 177.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 176.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 174.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 172.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 171.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 170.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 167.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 166.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 166.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 163.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 163.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 161.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 161.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 159.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 158.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 157.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 155.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 153.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 153.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 153.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 151.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 151.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 149.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 148.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 146.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 145.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 145.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 144.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 144.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 142.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 142.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 141.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 140.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 140.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 134.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 133.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 133.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 132.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 129.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 128.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 128.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 125.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 124.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 121.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 117.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 115.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 115.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 113.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 112.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 109.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 106.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 102.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 99.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 89.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 88.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 88.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 80.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 73.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 73.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 264.0
FF:10164-103B2 76 years, female 264.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.4
Pig sample Sample description nTPM
Caudate
nTPM: 288.4
Samples: 4

Max nTPM: 310.5
Min nTPM: 252.0
Sample A Female 303.6
Sample B Female 310.5
Sample C Male 287.5
Sample D Male 252.0

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