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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:135.7 nTPM
FANTOM5:125.5 Scaled Tags Per Million
Pig:106.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023840Antibody CAB012245
Glial cells Not detectedLow
Neuronal cells Not detectedMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 135.7
Samples: 246

Max nTPM: 311.2
Min nTPM: 74.0
Std nTPM: 34.6
Median nTPM: 130.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 311.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 250.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 249.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 219.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 218.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 216.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 214.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 213.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 208.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 199.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 197.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 196.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 194.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 193.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 192.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 191.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 190.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 189.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 189.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 188.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 187.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 186.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 183.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 180.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 180.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 179.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 177.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 177.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 176.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 175.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 175.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 174.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 173.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 172.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 172.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 171.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 170.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 169.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 168.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 168.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 168.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 168.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 166.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 166.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 165.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 164.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 164.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 164.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 163.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 162.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 162.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 161.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 161.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 160.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 159.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 159.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 159.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 158.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 157.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 156.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 156.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 156.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 156.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 155.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 154.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 154.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 153.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 152.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 151.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 150.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 149.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 149.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 148.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 148.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 148.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 148.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 148.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 147.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 146.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 146.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 145.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 145.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 145.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 144.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 143.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 143.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 143.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 142.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 142.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 142.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 142.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 141.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 141.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 141.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 140.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 139.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 139.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 139.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 139.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 138.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 138.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 137.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 137.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 136.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 135.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 135.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 135.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 135.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 135.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 134.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 134.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 133.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 133.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 133.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 133.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 133.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 133.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 132.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 132.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 131.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 131.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 130.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 129.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 129.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 129.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 129.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 129.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 129.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 128.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 128.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 128.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 128.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 127.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 127.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 127.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 126.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 126.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 125.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 125.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 125.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 125.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 124.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 124.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 124.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 123.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 123.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 123.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 122.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 121.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 121.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 121.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 120.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 120.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 119.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 118.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 118.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 118.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 117.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 117.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 117.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 117.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 116.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 116.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 116.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 116.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 115.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 115.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 115.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 115.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 114.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 113.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 112.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 112.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 111.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 110.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 110.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 109.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 108.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 108.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 108.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 108.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 108.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 108.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 107.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 107.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 107.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 107.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 106.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 106.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 106.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 106.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 105.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 105.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 105.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 104.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 104.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 104.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 104.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 104.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 104.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 103.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 102.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 102.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 102.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 102.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 101.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 101.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 101.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 101.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 101.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 101.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 100.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 100.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 99.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 99.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 98.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 98.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 97.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 97.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 96.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 96.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 96.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 96.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 95.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 94.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 94.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 93.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 92.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 91.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 90.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 90.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 89.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 86.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 86.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 86.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 85.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 84.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 80.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 80.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 76.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 74.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 125.5
FF:10164-103B2 76 years, female 125.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.5
Pig sample Sample description nTPM
Caudate
nTPM: 106.5
Samples: 4

Max nTPM: 117.6
Min nTPM: 92.3
Sample A Female 117.6
Sample B Female 106.1
Sample C Male 110.1
Sample D Male 92.3

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