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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

53.268
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:16.4 nTPM
GTEx:26.0 nTPM
FANTOM5:6.5 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040454
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA040454
Hippocampal formation mean intensity 53.268
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 21.309
Molecular layer of the dentate gyrus 11.966
Granular dentate gyrus 14.592
CA1 - oriens layer 15.388
CA1 - pyramidal layer 11.806
CA1 - radiatum layer 11.074
CA2 - oriens layer 4.033
CA2 - pyramidal layer 6.829
CA2 - radiatum layer 8.565
CA3 - oriens layer 3.874
CA3 - pyramidal layer 7.423
CA3 - radiatum layer 7.155
Stratum lucidum 6.404
Lacunosum moleculare 53.268
Subiculum 5.023

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.4
Sample id Sample description nTPM
Hippocampus
nTPM: 16.4
1898 Male, age 80, left hemisphere 22.3
2529 Female, age 94, left hemisphere 19.0
1911 Female, age 85, right hemisphere 18.4
2621 Female, age 67, right hemisphere 17.2
2148 Female, age 91, left hemisphere 11.7
1855 Male, age 76, left hemisphere 10.1

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.0
Samples: 197

Max nTPM: 114.4
Min nTPM: 1.4
Std nTPM: 19.5
Median nTPM: 22.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 114.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 113.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 102.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 81.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 77.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 76.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 74.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 73.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 70.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 65.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 64.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 64.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 63.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 59.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 58.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 57.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 57.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 49.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 48.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 47.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 45.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 44.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 43.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 42.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 42.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 42.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 41.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 40.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 40.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 40.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 40.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 40.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 40.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 39.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 39.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 39.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 38.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 37.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 37.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 37.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 36.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 36.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 35.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 35.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 35.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 34.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 33.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 33.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 33.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 33.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 33.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 32.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 32.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 31.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 31.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 30.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 30.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 30.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 29.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 29.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 29.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 29.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 29.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 28.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 28.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 28.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 28.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 28.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 27.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 27.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 27.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 26.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 26.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 26.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 26.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 26.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 26.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 26.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 25.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 25.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 25.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 25.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 25.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 25.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 25.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 25.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 24.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 24.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 24.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 24.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 24.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 24.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 23.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 23.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 22.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 22.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 22.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 22.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 22.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 21.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 21.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 21.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 21.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 21.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 20.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 20.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 20.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 20.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 20.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 20.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 19.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 19.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 19.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 19.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 19.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 19.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 19.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 18.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 18.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 18.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 18.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 18.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 18.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 18.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 18.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 18.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 18.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 18.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 18.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 18.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 17.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 17.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 16.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 16.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 16.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 16.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 16.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 16.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 15.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 15.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 14.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 14.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 13.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 13.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 12.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 12.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 12.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 12.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 12.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 12.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 11.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 11.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 11.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 11.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 10.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 10.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 10.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 10.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 10.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 9.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 9.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 9.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 9.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 9.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 9.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 8.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 8.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 7.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 7.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 6.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 6.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 6.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 6.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 6.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 6.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 6.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 5.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 5.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 5.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 5.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 5.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 4.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 4.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 4.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 4.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 4.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 3.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 3.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 3.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 3.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 3.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 2.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 2.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 2.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 6.5
FF:10169-103B7 60 years, female 8.3
FF:10153-102I9 76 years, female 4.7

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


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