We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RTCA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RTCA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:13.6 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:20.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027982Antibody HPA028151
Glial cells Not detectedLow
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.6
Samples: 246

Max nTPM: 27.0
Min nTPM: 7.7
Std nTPM: 2.9
Median nTPM: 13.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 24.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 23.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 20.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 20.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 19.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 19.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 19.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 19.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 19.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 18.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 18.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 18.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 18.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 17.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 17.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 17.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 17.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 17.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 17.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 17.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 17.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 17.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 17.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 17.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 17.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 17.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 17.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 17.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 17.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 17.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 17.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 16.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 16.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 16.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 16.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 16.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 16.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 16.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 16.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 16.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 16.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 16.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 16.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 16.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 16.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 16.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 15.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 15.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 15.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 15.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 15.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 15.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 15.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 15.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 15.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 15.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 15.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 15.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 15.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 15.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 15.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 15.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 15.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 15.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 15.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 15.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 15.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 15.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 14.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 14.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 14.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 14.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 14.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 14.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 14.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 14.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 14.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 14.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 14.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 14.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 14.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 14.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 14.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 14.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 14.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 14.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 14.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 14.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 14.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 14.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 14.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 14.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 14.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 14.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 14.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 14.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 14.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 14.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 14.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 14.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 14.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 14.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 13.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 13.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 13.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 13.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 13.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 13.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 13.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 13.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 13.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 13.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 13.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 13.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 13.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 13.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 13.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 13.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 13.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 13.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 13.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 13.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 13.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 13.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 13.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 13.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 13.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 13.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 13.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 13.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 12.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 12.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 12.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 12.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 12.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 12.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 12.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 12.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 12.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 12.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 12.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 12.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 12.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 12.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 12.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 12.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 12.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 12.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 12.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 12.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 12.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 12.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 12.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 12.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 12.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 12.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 11.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 11.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 11.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 11.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 11.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 11.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 11.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 11.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 11.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 11.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 11.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 11.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 11.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 11.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 11.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 11.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 11.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 11.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 11.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 11.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 11.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 11.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 11.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 11.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 11.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 11.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 11.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 11.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 11.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 11.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 11.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 11.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 11.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 11.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 10.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 10.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 10.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 10.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 10.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 10.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 10.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 10.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 10.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 10.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 10.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 10.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 10.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 10.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 10.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 10.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 10.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 10.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 10.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 10.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 10.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 10.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 9.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 9.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 9.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 9.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 9.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 9.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 9.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 9.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 9.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 9.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 9.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 9.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 9.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 9.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 9.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 9.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 9.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 9.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 9.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 9.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 8.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.1
FF:10164-103B2 76 years, female 39.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.4
Pig sample Sample description nTPM
Caudate
nTPM: 20.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 17.0
Sample A Female 20.8
Sample B Female 17.0
Sample C Male 25.9
Sample D Male 18.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org