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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:127.1 nTPM
FANTOM5:138.8 Scaled Tags Per Million
Pig:73.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037539Antibody HPA037540
Glial cells HighLow
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 127.1
Samples: 246

Max nTPM: 304.9
Min nTPM: 36.3
Std nTPM: 43.7
Median nTPM: 116.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 304.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 285.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 238.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 238.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 230.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 228.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 222.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 218.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 218.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 212.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 209.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 208.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 208.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 208.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 204.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 201.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 200.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 196.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 194.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 192.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 189.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 187.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 186.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 182.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 180.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 179.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 179.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 178.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 178.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 178.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 177.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 177.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 177.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 176.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 176.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 175.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 175.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 174.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 174.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 173.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 171.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 171.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 170.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 170.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 169.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 168.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 168.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 167.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 165.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 163.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 162.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 162.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 161.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 161.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 161.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 160.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 159.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 159.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 158.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 158.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 157.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 157.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 157.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 156.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 156.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 152.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 152.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 150.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 150.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 149.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 148.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 147.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 146.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 146.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 145.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 145.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 144.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 144.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 143.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 141.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 141.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 138.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 138.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 137.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 137.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 134.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 134.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 133.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 133.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 133.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 133.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 132.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 132.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 131.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 131.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 131.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 131.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 130.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 129.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 129.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 128.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 126.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 125.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 125.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 124.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 124.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 122.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 122.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 122.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 122.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 121.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 120.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 120.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 119.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 119.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 118.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 118.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 117.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 117.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 116.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 116.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 116.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 115.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 115.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 115.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 114.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 114.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 114.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 113.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 113.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 112.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 112.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 111.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 111.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 110.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 110.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 110.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 110.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 109.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 109.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 109.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 109.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 109.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 109.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 108.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 108.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 108.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 107.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 107.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 106.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 106.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 106.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 105.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 104.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 104.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 104.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 103.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 103.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 103.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 103.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 103.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 103.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 103.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 102.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 102.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 102.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 102.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 101.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 101.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 100.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 98.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 98.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 97.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 97.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 96.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 96.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 96.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 95.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 95.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 95.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 95.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 94.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 93.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 92.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 92.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 90.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 90.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 90.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 90.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 89.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 89.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 88.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 88.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 87.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 86.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 86.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 85.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 85.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 84.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 83.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 83.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 82.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 82.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 82.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 81.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 81.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 81.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 80.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 80.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 80.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 79.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 79.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 79.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 78.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 78.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 78.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 78.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 77.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 77.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 77.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 77.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 76.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 76.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 75.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 75.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 75.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 73.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 72.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 72.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 70.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 70.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 67.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 67.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 53.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 53.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 49.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 49.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 43.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 36.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

138.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 138.8
FF:10164-103B2 76 years, female 138.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.7
Pig sample Sample description nTPM
Caudate
nTPM: 73.7
Samples: 4

Max nTPM: 79.6
Min nTPM: 66.8
Sample A Female 69.2
Sample B Female 79.6
Sample C Male 79.2
Sample D Male 66.8

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