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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:82.3 nTPM
FANTOM5:527.8 Scaled Tags Per Million
Pig:128.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063238
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 82.3
Samples: 246

Max nTPM: 265.8
Min nTPM: 15.0
Std nTPM: 43.5
Median nTPM: 77.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 265.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 221.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 195.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 189.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 185.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 171.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 170.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 169.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 168.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 167.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 161.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 159.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 157.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 157.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 156.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 153.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 149.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 146.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 145.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 144.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 144.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 143.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 140.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 140.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 139.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 138.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 137.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 136.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 135.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 135.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 133.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 129.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 129.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 128.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 128.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 125.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 124.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 124.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 124.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 123.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 121.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 121.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 120.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 119.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 119.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 119.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 119.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 118.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 118.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 117.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 117.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 116.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 116.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 116.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 115.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 115.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 114.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 114.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 114.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 114.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 113.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 112.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 111.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 110.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 110.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 110.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 108.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 108.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 107.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 107.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 107.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 106.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 105.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 104.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 104.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 103.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 103.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 100.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 100.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 100.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 97.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 97.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 97.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 96.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 96.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 96.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 95.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 95.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 94.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 94.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 92.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 92.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 91.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 91.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 91.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 91.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 90.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 90.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 90.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 89.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 88.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 87.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 86.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 85.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 85.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 84.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 84.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 84.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 83.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 82.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 82.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 82.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 82.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 82.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 82.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 81.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 77.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 77.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 76.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 76.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 75.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 74.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 74.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 73.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 72.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 72.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 71.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 71.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 70.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 70.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 69.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 69.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 69.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 68.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 68.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 66.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 65.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 64.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 64.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 64.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 63.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 63.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 63.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 63.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 62.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 60.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 59.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 59.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 59.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 59.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 59.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 58.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 57.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 56.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 56.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 56.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 56.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 55.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 54.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 53.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 52.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 51.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 51.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 51.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 50.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 50.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 50.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 50.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 48.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 48.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 47.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 47.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 47.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 46.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 45.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 45.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 45.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 44.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 44.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 42.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 41.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 40.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 39.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 39.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 39.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 38.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 38.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 38.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 38.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 37.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 37.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 37.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 37.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 37.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 36.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 36.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 35.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 35.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 34.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 34.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 33.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 32.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 32.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 32.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 32.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 32.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 31.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 31.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 31.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 30.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 30.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 30.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 28.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 28.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 27.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 25.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 25.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 25.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 24.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 24.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 24.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 23.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 21.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 21.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 21.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 19.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 19.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 18.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 18.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 15.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

527.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 527.8
FF:10164-103B2 76 years, female 527.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.5
Pig sample Sample description nTPM
Caudate
nTPM: 128.5
Samples: 4

Max nTPM: 135.8
Min nTPM: 121.1
Sample A Female 131.1
Sample B Female 121.1
Sample C Male 135.8
Sample D Male 126.0

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