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TSPAN3
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:279.7 nTPM
FANTOM5:223.2 Scaled Tags Per Million
Pig:147.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015996
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 279.7
Samples: 246

Max nTPM: 460.9
Min nTPM: 171.1
Std nTPM: 49.4
Median nTPM: 273.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 460.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 433.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 425.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 422.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 413.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 409.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 402.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 399.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 384.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 373.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 373.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 372.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 370.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 366.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 362.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 361.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 361.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 359.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 357.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 356.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 355.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 351.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 350.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 349.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 349.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 348.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 347.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 345.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 343.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 343.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 341.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 340.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 340.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 337.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 336.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 335.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 334.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 334.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 332.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 330.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 329.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 328.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 327.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 326.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 322.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 321.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 319.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 318.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 318.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 317.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 314.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 313.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 312.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 312.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 311.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 309.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 309.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 308.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 308.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 308.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 307.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 307.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 307.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 306.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 305.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 303.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 302.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 300.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 297.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 296.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 295.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 295.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 295.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 294.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 294.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 294.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 293.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 292.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 292.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 291.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 290.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 290.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 290.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 290.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 288.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 288.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 286.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 286.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 286.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 286.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 286.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 285.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 284.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 283.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 282.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 281.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 281.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 281.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 281.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 281.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 280.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 280.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 279.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 278.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 278.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 278.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 277.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 277.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 276.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 276.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 276.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 276.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 276.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 276.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 275.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 275.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 275.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 275.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 275.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 274.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 274.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 274.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 274.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 273.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 273.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 272.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 271.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 271.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 270.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 270.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 270.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 270.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 267.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 267.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 267.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 266.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 266.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 265.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 264.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 264.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 264.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 263.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 263.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 263.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 263.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 262.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 262.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 261.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 261.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 260.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 260.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 260.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 260.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 259.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 259.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 259.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 257.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 257.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 257.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 256.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 255.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 254.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 254.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 254.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 254.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 252.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 252.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 252.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 252.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 250.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 250.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 250.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 250.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 249.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 248.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 248.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 248.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 247.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 247.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 247.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 247.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 246.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 246.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 246.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 246.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 246.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 246.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 245.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 245.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 245.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 245.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 244.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 243.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 242.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 241.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 240.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 239.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 238.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 238.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 237.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 237.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 236.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 235.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 235.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 235.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 234.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 233.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 233.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 232.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 232.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 232.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 232.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 232.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 231.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 231.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 231.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 230.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 230.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 229.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 228.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 226.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 226.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 226.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 224.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 223.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 223.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 222.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 222.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 220.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 220.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 219.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 218.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 217.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 215.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 211.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 209.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 205.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 202.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 201.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 200.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 199.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 194.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 193.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 178.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 177.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 171.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

223.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 223.2
FF:10164-103B2 76 years, female 223.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.4
Pig sample Sample description nTPM
Caudate
nTPM: 147.4
Samples: 4

Max nTPM: 161.1
Min nTPM: 136.3
Sample A Female 145.6
Sample B Female 146.5
Sample C Male 161.1
Sample D Male 136.3

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