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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:210.7 nTPM
GTEx:240.1 nTPM
FANTOM5:233.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015996
Glial cells Medium
Neuronal cells High



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.7
Sample id Sample description nTPM
Hippocampus
nTPM: 210.7
1898 Male, age 80, left hemisphere 258.8
1855 Male, age 76, left hemisphere 232.6
2529 Female, age 94, left hemisphere 207.0
2148 Female, age 91, left hemisphere 203.3
2621 Female, age 67, right hemisphere 181.7
1911 Female, age 85, right hemisphere 180.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 240.1
Samples: 197

Max nTPM: 410.3
Min nTPM: 118.7
Std nTPM: 49.1
Median nTPM: 237.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 410.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 359.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 355.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 348.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 345.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 343.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 342.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 340.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 334.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 331.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 325.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 325.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 322.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 317.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 316.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 316.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 315.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 315.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 312.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 309.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 309.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 308.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 307.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 304.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 300.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 298.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 295.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 292.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 291.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 289.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 288.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 288.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 284.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 283.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 283.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 281.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 281.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 281.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 279.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 278.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 278.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 276.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 275.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 273.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 272.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 271.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 270.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 269.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 267.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 267.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 266.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 265.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 264.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 263.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 263.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 260.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 260.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 260.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 259.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 259.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 258.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 258.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 258.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 257.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 256.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 255.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 255.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 254.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 253.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 252.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 251.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 250.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 250.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 249.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 248.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 248.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 248.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 248.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 248.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 247.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 246.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 246.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 245.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 245.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 245.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 243.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 243.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 242.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 242.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 242.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 241.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 240.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 240.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 239.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 239.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 239.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 238.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 238.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 237.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 237.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 235.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 235.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 235.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 234.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 234.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 234.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 233.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 231.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 231.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 230.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 230.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 230.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 229.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 228.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 227.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 227.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 227.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 226.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 226.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 225.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 225.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 225.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 224.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 223.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 223.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 222.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 221.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 220.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 220.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 219.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 219.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 218.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 217.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 217.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 215.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 215.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 215.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 214.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 212.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 210.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 209.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 209.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 209.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 208.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 208.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 207.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 207.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 207.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 207.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 206.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 206.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 206.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 205.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 205.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 204.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 203.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 203.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 203.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 202.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 202.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 201.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 201.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 200.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 199.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 196.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 194.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 193.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 192.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 190.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 190.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 190.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 189.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 185.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 183.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 182.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 181.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 178.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 178.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 174.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 174.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 172.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 171.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 171.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 169.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 169.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 167.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 162.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 160.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 160.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 157.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 157.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 153.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 147.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 142.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 140.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 123.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 118.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

233.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 233.7
FF:10153-102I9 76 years, female 237.0
FF:10169-103B7 60 years, female 230.5

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