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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:20.7 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:8.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA021240
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.7
Samples: 246

Max nTPM: 46.3
Min nTPM: 7.8
Std nTPM: 5.7
Median nTPM: 19.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 46.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 38.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 38.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 35.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 34.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 34.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 34.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 31.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 31.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 31.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 31.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 31.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 31.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 31.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 30.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 30.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 30.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 30.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 30.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 29.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 28.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 28.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 28.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 28.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 28.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 28.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 28.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 27.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 27.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 27.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 27.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 27.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 27.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 26.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 26.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 26.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 26.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 25.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 25.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 25.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 25.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 25.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 24.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 24.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 24.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 24.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 24.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 24.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 24.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 24.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 24.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 24.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 24.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 24.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 23.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 23.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 23.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 23.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 23.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 23.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 23.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 23.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 23.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 23.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 23.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 23.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 23.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 23.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 23.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 23.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 23.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 23.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 22.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 22.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 22.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 22.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 22.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 22.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 22.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 22.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 22.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 22.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 22.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 22.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 21.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 21.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 21.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 21.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 21.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 21.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 21.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 21.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 21.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 21.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 21.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 21.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 21.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 21.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 21.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 21.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 21.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 20.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 20.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 20.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 20.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 20.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 20.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 20.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 20.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 20.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 20.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 20.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 20.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 20.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 20.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 20.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 19.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 19.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 19.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 19.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 19.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 19.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 19.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 19.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 19.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 19.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 19.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 19.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 19.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 19.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 19.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 19.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 19.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 19.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 19.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 18.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 18.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 18.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 18.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 18.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 18.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 18.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 18.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 18.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 18.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 18.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 18.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 18.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 18.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 18.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 18.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 18.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 18.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 18.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 18.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 18.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 18.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 18.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 18.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 17.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 17.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 17.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 17.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 17.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 17.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 17.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 17.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 17.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 17.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 17.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 17.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 17.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 17.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 17.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 17.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 17.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 16.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 16.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 16.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 16.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 16.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 16.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 16.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 16.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 16.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 16.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 16.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 16.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 16.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 16.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 15.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 15.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 15.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 15.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 15.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 15.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 15.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 15.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 15.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 15.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 15.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 15.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 15.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 15.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 15.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 15.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 15.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 14.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 14.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 14.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 14.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 14.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 14.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 14.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 14.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 14.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 14.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 13.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 13.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 13.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 13.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 13.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 12.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 12.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 12.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 12.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 12.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 12.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 12.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 12.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 12.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 11.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 11.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 10.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 9.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 9.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 7.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.5
FF:10164-103B2 76 years, female 9.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.4
Pig sample Sample description nTPM
Caudate
nTPM: 8.4
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.6
Sample A Female 8.4
Sample B Female 8.9
Sample C Male 7.6
Sample D Male 8.6

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