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PFDN2
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  • PFDN2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:120.6 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:19.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA028700
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 120.6
Samples: 246

Max nTPM: 262.9
Min nTPM: 54.7
Std nTPM: 32.5
Median nTPM: 117.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 262.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 248.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 244.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 231.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 211.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 208.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 206.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 200.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 186.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 182.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 180.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 180.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 177.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 175.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 168.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 165.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 162.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 161.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 160.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 158.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 158.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 157.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 157.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 156.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 156.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 156.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 155.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 155.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 153.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 153.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 153.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 153.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 153.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 151.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 150.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 149.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 149.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 149.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 147.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 147.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 146.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 145.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 145.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 145.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 144.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 144.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 144.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 143.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 142.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 141.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 141.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 141.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 141.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 141.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 140.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 140.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 140.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 138.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 138.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 137.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 137.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 136.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 136.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 136.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 135.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 134.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 134.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 133.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 133.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 132.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 132.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 132.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 131.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 131.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 131.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 131.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 130.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 129.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 128.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 128.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 128.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 128.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 127.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 127.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 127.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 127.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 127.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 127.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 126.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 126.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 126.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 126.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 125.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 125.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 125.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 125.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 125.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 124.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 124.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 124.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 124.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 123.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 122.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 122.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 122.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 122.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 122.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 122.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 121.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 121.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 121.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 120.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 119.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 119.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 119.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 118.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 118.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 118.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 116.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 116.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 116.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 116.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 115.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 114.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 114.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 114.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 114.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 114.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 113.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 113.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 112.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 112.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 112.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 111.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 111.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 111.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 110.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 110.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 109.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 109.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 108.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 108.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 108.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 108.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 107.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 107.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 107.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 106.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 106.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 105.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 105.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 105.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 104.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 104.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 104.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 104.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 104.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 103.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 103.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 103.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 102.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 102.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 102.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 102.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 101.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 101.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 101.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 101.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 101.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 101.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 100.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 100.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 100.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 99.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 99.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 97.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 97.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 96.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 96.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 96.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 96.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 96.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 96.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 95.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 95.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 95.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 95.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 95.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 95.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 95.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 94.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 94.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 94.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 93.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 93.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 92.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 92.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 90.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 89.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 89.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 88.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 88.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 87.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 87.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 87.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 87.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 85.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 85.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 85.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 85.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 84.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 84.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 84.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 83.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 82.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 82.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 82.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 80.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 78.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 78.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 78.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 78.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 76.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 75.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 74.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 73.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 71.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 70.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 70.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 69.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 69.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 68.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 63.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 61.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 54.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.5
FF:10164-103B2 76 years, female 82.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.8
Pig sample Sample description nTPM
Caudate
nTPM: 19.8
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.2
Sample A Female 19.7
Sample B Female 20.4
Sample C Male 20.8
Sample D Male 18.2

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