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ZMAT2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:87.9 nTPM
FANTOM5:127.5 Scaled Tags Per Million
Pig:39.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036518
Glial cells Not detected
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 87.9
Samples: 246

Max nTPM: 250.4
Min nTPM: 41.7
Std nTPM: 32.7
Median nTPM: 80.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 250.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 180.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 170.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 168.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 167.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 166.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 159.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 157.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 153.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 151.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 151.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 149.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 148.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 147.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 145.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 141.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 140.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 139.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 139.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 138.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 137.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 137.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 137.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 136.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 136.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 135.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 135.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 134.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 134.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 134.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 133.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 132.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 132.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 130.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 127.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 127.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 126.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 125.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 124.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 124.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 123.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 121.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 120.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 118.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 117.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 115.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 113.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 113.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 112.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 111.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 111.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 111.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 111.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 111.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 110.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 109.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 108.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 107.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 106.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 104.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 104.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 103.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 103.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 102.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 102.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 102.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 101.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 100.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 100.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 100.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 97.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 97.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 96.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 96.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 96.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 96.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 95.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 95.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 94.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 94.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 94.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 94.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 93.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 93.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 92.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 92.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 90.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 90.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 90.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 90.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 89.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 89.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 89.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 89.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 88.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 88.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 87.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 87.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 87.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 86.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 86.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 86.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 86.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 85.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 85.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 85.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 85.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 84.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 83.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 83.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 82.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 82.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 82.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 82.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 81.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 81.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 81.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 80.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 80.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 79.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 79.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 79.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 79.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 78.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 78.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 77.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 77.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 77.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 76.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 76.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 76.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 76.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 75.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 74.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 74.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 74.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 73.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 73.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 73.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 72.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 72.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 72.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 72.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 71.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 71.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 71.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 70.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 70.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 70.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 70.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 70.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 70.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 70.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 70.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 69.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 69.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 69.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 68.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 68.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 68.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 67.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 66.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 66.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 65.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 65.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 65.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 64.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 64.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 64.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 63.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 63.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 63.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 63.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 62.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 62.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 62.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 62.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 62.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 62.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 62.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 61.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 61.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 61.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 60.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 60.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 60.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 60.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 59.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 59.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 59.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 59.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 59.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 58.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 58.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 58.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 57.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 57.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 56.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 56.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 56.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 55.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 55.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 55.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 55.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 54.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 54.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 54.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 54.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 54.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 53.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 53.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 53.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 53.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 52.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 52.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 52.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 52.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 51.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 51.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 51.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 51.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 49.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 49.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 49.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 49.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 48.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 48.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 48.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 47.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 46.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 45.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 45.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 45.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 41.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 127.5
FF:10164-103B2 76 years, female 127.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.4
Pig sample Sample description nTPM
Caudate
nTPM: 39.4
Samples: 4

Max nTPM: 43.5
Min nTPM: 35.6
Sample A Female 38.4
Sample B Female 40.0
Sample C Male 43.5
Sample D Male 35.6

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