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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:152.6 nTPM
FANTOM5:256.6 Scaled Tags Per Million
Pig:13.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010961Antibody HPA011419
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 152.6
Samples: 246

Max nTPM: 556.2
Min nTPM: 25.0
Std nTPM: 73.8
Median nTPM: 132.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 556.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 418.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 399.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 376.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 356.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 350.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 333.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 322.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 306.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 295.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 289.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 285.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 284.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 284.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 284.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 282.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 275.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 274.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 262.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 258.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 257.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 257.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 256.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 252.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 250.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 250.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 249.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 249.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 247.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 236.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 234.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 232.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 229.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 224.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 224.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 221.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 220.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 219.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 214.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 213.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 212.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 212.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 210.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 209.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 209.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 208.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 203.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 203.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 202.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 201.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 200.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 198.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 198.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 198.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 198.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 197.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 195.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 195.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 194.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 193.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 192.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 192.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 190.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 189.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 188.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 187.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 187.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 187.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 186.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 185.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 181.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 180.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 177.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 176.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 175.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 174.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 173.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 173.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 172.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 172.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 171.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 169.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 168.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 167.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 166.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 165.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 165.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 164.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 163.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 162.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 161.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 161.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 159.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 158.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 157.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 156.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 155.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 155.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 153.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 152.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 149.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 148.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 146.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 146.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 144.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 143.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 141.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 141.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 141.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 141.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 141.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 140.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 139.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 138.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 138.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 137.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 136.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 135.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 134.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 134.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 134.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 132.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 131.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 131.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 131.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 130.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 130.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 129.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 129.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 129.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 128.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 128.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 128.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 127.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 127.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 126.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 125.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 125.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 125.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 124.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 124.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 123.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 121.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 121.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 121.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 120.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 119.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 118.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 118.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 117.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 117.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 116.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 116.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 116.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 116.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 115.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 115.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 115.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 115.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 115.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 113.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 111.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 111.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 111.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 110.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 109.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 108.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 108.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 107.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 107.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 106.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 106.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 106.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 103.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 103.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 103.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 103.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 102.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 102.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 100.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 100.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 99.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 99.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 99.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 97.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 97.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 96.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 95.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 95.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 94.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 93.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 92.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 91.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 90.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 89.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 88.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 87.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 86.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 86.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 85.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 84.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 84.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 83.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 83.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 83.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 82.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 81.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 81.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 81.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 79.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 79.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 78.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 76.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 76.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 76.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 76.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 75.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 74.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 74.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 73.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 71.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 69.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 68.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 66.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 65.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 63.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 62.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 61.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 61.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 58.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 57.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 56.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 35.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 25.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 25.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

256.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 256.6
FF:10164-103B2 76 years, female 256.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.2
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 10.7
Sample A Female 12.3
Sample B Female 12.7
Sample C Male 17.1
Sample D Male 10.7

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