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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

47.531
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:14.7 nTPM
GTEx:23.2 nTPM
FANTOM5:20.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA021305Antibody CAB004559
Glial cells MediumMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA021305
Hippocampal formation mean intensity 47.531
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 47.531
Molecular layer of the dentate gyrus 30.278
Granular dentate gyrus 33.684
CA1 - oriens layer 15.821
CA1 - pyramidal layer 30.114
CA1 - radiatum layer 23.804
CA2 - oriens layer 12.434
CA2 - pyramidal layer 18.810
CA2 - radiatum layer 21.955
CA3 - oriens layer 10.514
CA3 - pyramidal layer 21.717
CA3 - radiatum layer 18.979
Stratum lucidum 19.240
Lacunosum moleculare 26.584
Subiculum 11.707

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.7
Sample id Sample description nTPM
Hippocampus
nTPM: 14.7
2621 Female, age 67, right hemisphere 23.9
1898 Male, age 80, left hemisphere 15.6
1855 Male, age 76, left hemisphere 15.3
1911 Female, age 85, right hemisphere 13.8
2529 Female, age 94, left hemisphere 10.5
2148 Female, age 91, left hemisphere 9.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.2
Samples: 197

Max nTPM: 86.3
Min nTPM: 2.0
Std nTPM: 15.4
Median nTPM: 19.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 86.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 84.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 79.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 70.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 70.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 66.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 60.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 58.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 57.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 56.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 55.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 55.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 49.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 49.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 46.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 46.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 46.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 46.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 44.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 43.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 43.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 42.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 41.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 41.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 41.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 41.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 41.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 41.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 39.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 38.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 37.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 36.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 36.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 35.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 35.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 34.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 34.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 33.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 32.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 31.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 31.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 31.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 31.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 31.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 30.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 30.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 30.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 29.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 28.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 27.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 27.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 27.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 26.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 26.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 26.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 26.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 26.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 26.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 26.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 25.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 25.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 25.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 25.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 24.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 24.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 24.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 24.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 23.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 23.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 23.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 23.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 23.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 23.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 23.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 23.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 23.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 22.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 22.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 22.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 22.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 22.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 22.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 21.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 21.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 21.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 21.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 21.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 21.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 21.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 20.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 20.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 20.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 20.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 19.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 19.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 19.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 19.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 19.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 18.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 18.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 18.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 18.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 18.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 18.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 17.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 17.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 17.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 17.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 17.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 17.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 17.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 17.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 16.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 16.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 16.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 16.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 16.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 16.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 16.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 16.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 16.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 16.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 15.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 15.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 15.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 15.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 15.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 14.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 14.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 14.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 14.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 14.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 14.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 14.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 13.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 13.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 13.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 13.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 13.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 13.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 13.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 13.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 13.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 13.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 13.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 13.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 13.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 13.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 13.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 12.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 12.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 11.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 11.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 11.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 11.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 11.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 11.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 10.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 10.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 10.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 10.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 10.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 10.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 9.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 9.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 9.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 9.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 9.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 9.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 9.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 8.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 8.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 8.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 8.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 8.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 8.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 8.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 8.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 8.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 7.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 7.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 7.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 7.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 7.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 6.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 6.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 6.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 6.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 6.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 6.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 6.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 6.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 5.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 5.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 4.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 2.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.8
FF:10153-102I9 76 years, female 29.2
FF:10169-103B7 60 years, female 12.4

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