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  • GPM6A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:330.8 nTPM
FANTOM5:734.5 Scaled Tags Per Million
Pig:605.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA017338
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

330.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 330.8
Samples: 246

Max nTPM: 779.3
Min nTPM: 117.4
Std nTPM: 94.5
Median nTPM: 323.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 779.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 694.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 674.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 670.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 604.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 555.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 516.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 505.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 497.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 490.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 490.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 486.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 479.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 473.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 472.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 469.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 460.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 456.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 456.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 452.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 448.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 446.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 445.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 437.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 437.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 436.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 431.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 426.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 426.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 421.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 420.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 419.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 419.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 417.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 417.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 417.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 415.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 415.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 413.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 409.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 408.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 407.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 405.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 403.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 403.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 402.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 401.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 399.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 399.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 396.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 394.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 392.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 391.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 390.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 386.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 385.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 385.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 383.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 382.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 382.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 381.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 381.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 378.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 377.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 377.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 377.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 376.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 374.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 372.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 372.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 370.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 368.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 368.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 368.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 368.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 368.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 367.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 367.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 367.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 367.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 366.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 366.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 363.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 362.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 362.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 362.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 362.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 361.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 359.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 357.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 353.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 352.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 352.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 351.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 351.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 349.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 348.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 348.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 346.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 345.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 344.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 344.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 344.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 344.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 343.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 343.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 343.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 343.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 342.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 341.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 339.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 337.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 334.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 334.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 333.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 333.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 333.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 329.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 328.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 327.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 327.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 323.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 323.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 323.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 321.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 319.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 318.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 316.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 314.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 314.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 313.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 312.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 310.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 309.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 309.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 309.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 308.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 307.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 307.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 306.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 306.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 306.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 304.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 303.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 302.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 301.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 300.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 300.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 299.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 297.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 297.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 297.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 297.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 296.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 296.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 294.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 293.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 293.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 292.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 291.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 291.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 291.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 290.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 288.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 288.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 287.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 285.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 284.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 284.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 283.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 281.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 281.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 280.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 279.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 277.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 277.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 274.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 274.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 274.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 273.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 272.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 271.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 271.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 268.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 268.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 268.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 268.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 267.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 266.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 266.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 266.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 265.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 264.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 261.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 258.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 257.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 257.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 256.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 254.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 254.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 253.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 252.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 251.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 249.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 248.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 247.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 245.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 245.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 240.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 239.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 238.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 238.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 232.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 232.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 232.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 230.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 229.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 229.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 229.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 224.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 223.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 220.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 219.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 218.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 217.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 213.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 212.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 211.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 209.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 208.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 200.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 199.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 197.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 197.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 195.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 191.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 184.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 183.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 181.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 174.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 165.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 159.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 157.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 118.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 117.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

734.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 734.5
FF:10164-103B2 76 years, female 734.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

605.9
Pig sample Sample description nTPM
Caudate
nTPM: 605.9
Samples: 4

Max nTPM: 635.0
Min nTPM: 582.4
Sample A Female 597.2
Sample B Female 609.0
Sample C Male 635.0
Sample D Male 582.4

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