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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

49.083
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:163.2 nTPM
GTEx:46.2 nTPM
FANTOM5:309.1 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA021307Antibody CAB072341
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA021307
Hippocampal formation mean intensity 49.083
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 29.888
Molecular layer of the dentate gyrus 32.666
Granular dentate gyrus 26.353
CA1 - oriens layer 24.796
CA1 - pyramidal layer 22.045
CA1 - radiatum layer 31.113
CA2 - oriens layer 41.873
CA2 - pyramidal layer 38.010
CA2 - radiatum layer 45.432
CA3 - oriens layer 49.083
CA3 - pyramidal layer 35.839
CA3 - radiatum layer 46.050
Stratum lucidum 33.118
Lacunosum moleculare 15.754
Subiculum 19.137

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.2
Sample id Sample description nTPM
Hippocampus
nTPM: 163.2
1911 Female, age 85, right hemisphere 187.4
1898 Male, age 80, left hemisphere 177.4
1855 Male, age 76, left hemisphere 173.9
2621 Female, age 67, right hemisphere 163.1
2148 Female, age 91, left hemisphere 157.2
2529 Female, age 94, left hemisphere 120.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.2
Samples: 197

Max nTPM: 96.8
Min nTPM: 9.5
Std nTPM: 18.0
Median nTPM: 43.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 96.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 91.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 91.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 90.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 87.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 86.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 84.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 82.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 80.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 78.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 78.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 77.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 76.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 75.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 74.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 73.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 72.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 71.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 71.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 70.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 70.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 69.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 68.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 68.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 67.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 67.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 66.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 66.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 66.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 66.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 65.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 65.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 65.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 63.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 63.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 63.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 63.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 61.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 61.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 60.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 60.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 59.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 59.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 59.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 59.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 58.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 58.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 58.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 57.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 57.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 57.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 56.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 56.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 56.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 56.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 56.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 56.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 55.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 55.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 55.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 55.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 55.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 55.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 55.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 55.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 54.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 54.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 53.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 53.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 53.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 53.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 52.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 52.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 51.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 51.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 51.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 50.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 50.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 50.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 49.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 49.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 49.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 48.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 48.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 48.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 48.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 47.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 46.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 46.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 46.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 45.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 45.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 45.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 45.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 45.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 44.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 43.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 43.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 43.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 43.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 43.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 42.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 42.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 42.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 42.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 42.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 42.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 42.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 41.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 41.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 41.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 41.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 40.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 40.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 40.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 40.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 39.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 39.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 39.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 39.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 39.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 38.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 38.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 38.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 38.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 38.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 38.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 37.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 36.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 36.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 36.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 36.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 36.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 36.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 36.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 35.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 35.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 35.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 34.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 34.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 34.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 34.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 34.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 34.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 33.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 33.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 33.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 33.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 32.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 32.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 31.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 31.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 31.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 31.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 31.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 30.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 30.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 30.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 30.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 29.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 29.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 29.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 29.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 29.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 29.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 29.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 28.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 28.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 26.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 25.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 25.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 25.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 25.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 25.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 24.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 24.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 23.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 23.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 23.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 22.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 22.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 21.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 21.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 20.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 20.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 20.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 20.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 19.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 19.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 19.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 19.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 18.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 15.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 14.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 11.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 11.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 9.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 309.1
FF:10169-103B7 60 years, female 342.7
FF:10153-102I9 76 years, female 275.5

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