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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:145.1 nTPM
FANTOM5:163.2 Scaled Tags Per Million
Pig:48.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038873Antibody HPA056195
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 145.1
Samples: 246

Max nTPM: 296.3
Min nTPM: 82.4
Std nTPM: 35.6
Median nTPM: 136.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 296.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 273.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 271.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 260.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 254.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 252.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 236.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 225.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 225.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 224.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 220.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 218.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 215.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 211.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 210.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 210.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 207.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 206.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 202.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 202.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 201.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 198.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 196.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 196.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 191.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 191.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 187.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 187.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 186.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 185.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 185.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 184.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 184.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 183.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 181.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 181.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 179.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 178.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 176.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 176.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 174.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 174.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 174.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 173.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 171.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 171.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 170.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 169.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 169.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 169.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 166.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 166.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 163.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 163.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 162.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 161.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 160.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 159.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 159.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 158.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 157.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 156.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 155.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 155.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 155.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 155.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 154.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 154.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 154.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 154.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 154.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 153.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 153.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 153.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 152.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 152.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 152.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 152.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 152.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 152.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 151.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 151.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 150.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 150.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 150.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 149.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 149.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 149.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 148.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 148.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 148.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 148.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 147.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 147.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 147.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 147.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 146.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 145.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 143.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 142.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 142.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 142.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 142.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 142.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 141.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 141.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 141.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 140.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 140.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 140.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 140.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 140.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 139.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 139.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 139.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 138.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 138.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 137.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 137.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 137.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 136.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 136.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 136.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 136.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 136.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 135.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 135.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 134.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 134.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 134.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 134.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 133.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 133.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 133.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 133.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 133.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 133.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 133.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 132.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 132.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 131.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 131.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 131.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 130.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 130.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 129.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 129.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 129.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 129.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 129.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 129.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 128.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 128.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 128.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 128.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 128.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 127.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 127.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 127.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 126.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 126.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 126.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 125.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 125.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 125.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 125.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 124.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 123.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 123.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 123.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 123.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 123.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 123.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 122.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 122.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 121.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 121.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 121.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 121.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 120.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 120.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 120.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 120.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 120.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 120.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 119.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 119.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 119.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 119.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 118.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 118.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 118.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 117.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 117.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 117.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 116.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 116.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 116.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 116.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 116.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 116.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 115.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 115.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 115.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 114.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 114.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 114.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 113.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 113.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 112.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 111.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 110.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 110.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 109.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 109.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 107.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 107.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 105.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 105.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 105.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 104.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 103.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 103.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 102.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 102.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 102.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 102.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 101.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 100.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 100.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 99.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 97.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 97.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 97.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 95.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 91.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 87.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 82.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 163.2
FF:10164-103B2 76 years, female 163.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
Pig sample Sample description nTPM
Caudate
nTPM: 48.5
Samples: 4

Max nTPM: 54.4
Min nTPM: 41.5
Sample A Female 47.5
Sample B Female 50.5
Sample C Male 54.4
Sample D Male 41.5

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