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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:335.3 nTPM
FANTOM5:251.8 Scaled Tags Per Million
Pig:114.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA058951Antibody HPA065649
Glial cells MediumMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 335.3
Samples: 246

Max nTPM: 1732.6
Min nTPM: 93.4
Std nTPM: 190.8
Median nTPM: 276.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1732.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1129.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1055.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1001.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 950.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 821.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 789.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 758.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 717.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 675.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 668.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 652.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 632.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 632.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 626.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 610.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 608.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 579.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 579.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 576.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 573.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 563.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 558.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 556.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 555.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 554.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 538.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 512.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 511.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 508.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 504.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 503.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 497.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 494.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 494.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 481.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 477.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 476.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 474.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 471.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 469.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 469.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 468.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 468.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 467.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 464.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 453.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 452.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 451.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 449.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 445.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 445.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 442.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 440.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 436.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 435.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 433.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 433.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 431.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 429.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 425.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 420.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 417.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 415.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 415.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 414.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 413.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 409.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 408.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 398.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 398.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 395.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 393.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 388.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 386.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 384.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 380.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 377.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 377.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 377.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 376.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 372.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 371.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 369.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 369.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 361.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 360.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 359.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 355.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 355.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 353.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 351.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 350.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 350.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 343.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 341.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 338.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 338.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 334.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 331.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 330.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 329.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 327.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 320.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 319.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 317.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 317.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 311.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 308.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 307.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 303.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 300.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 297.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 297.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 294.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 288.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 288.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 287.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 287.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 286.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 279.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 277.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 276.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 276.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 275.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 273.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 272.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 271.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 271.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 269.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 268.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 267.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 266.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 265.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 265.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 264.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 263.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 262.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 261.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 261.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 258.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 257.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 257.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 255.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 254.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 253.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 250.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 247.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 247.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 245.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 245.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 243.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 243.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 240.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 238.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 238.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 238.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 237.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 237.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 234.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 232.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 231.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 230.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 230.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 229.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 228.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 227.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 223.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 223.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 222.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 222.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 219.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 219.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 217.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 217.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 217.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 217.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 217.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 216.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 216.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 214.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 211.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 210.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 209.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 209.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 208.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 206.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 205.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 202.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 202.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 202.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 201.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 199.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 199.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 198.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 197.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 196.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 196.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 195.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 195.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 195.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 192.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 192.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 191.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 187.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 185.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 185.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 184.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 183.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 182.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 181.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 180.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 179.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 178.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 178.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 178.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 178.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 177.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 177.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 175.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 174.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 172.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 171.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 170.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 167.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 164.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 160.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 159.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 157.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 152.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 152.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 148.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 146.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 143.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 136.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 134.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 134.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 132.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 128.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 125.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 122.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 120.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 115.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 105.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 95.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 93.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

251.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 251.8
FF:10164-103B2 76 years, female 251.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.3
Pig sample Sample description nTPM
Caudate
nTPM: 114.3
Samples: 4

Max nTPM: 128.3
Min nTPM: 89.8
Sample A Female 125.5
Sample B Female 89.8
Sample C Male 128.3
Sample D Male 113.5

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