We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NRSN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NRSN1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:38.1 nTPM
FANTOM5:190.3 Scaled Tags Per Million
Pig:421.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA061006
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.1
Samples: 246

Max nTPM: 104.9
Min nTPM: 5.4
Std nTPM: 17.1
Median nTPM: 36.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 104.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 104.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 83.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 79.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 78.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 76.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 71.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 70.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 70.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 68.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 64.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 63.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 63.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 62.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 62.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 61.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 61.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 60.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 60.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 60.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 59.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 59.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 58.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 58.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 58.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 57.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 57.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 56.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 56.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 56.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 56.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 55.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 55.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 55.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 54.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 54.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 54.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 53.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 53.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 52.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 51.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 51.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 50.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 50.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 50.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 50.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 49.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 49.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 49.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 49.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 49.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 48.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 48.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 48.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 48.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 48.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 48.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 48.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 47.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 47.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 47.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 47.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 46.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 46.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 46.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 46.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 45.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 45.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 45.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 45.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 45.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 45.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 45.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 44.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 44.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 44.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 44.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 44.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 44.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 44.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 44.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 43.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 43.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 43.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 43.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 43.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 42.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 42.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 42.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 42.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 42.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 42.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 42.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 42.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 42.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 41.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 41.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 41.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 41.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 40.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 40.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 40.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 40.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 40.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 39.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 39.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 39.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 39.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 39.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 38.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 38.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 38.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 37.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 37.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 37.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 37.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 37.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 36.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 36.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 36.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 36.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 36.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 36.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 36.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 36.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 35.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 35.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 35.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 35.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 35.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 35.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 34.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 34.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 34.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 34.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 34.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 34.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 34.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 33.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 33.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 33.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 33.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 32.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 32.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 32.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 32.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 32.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 31.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 31.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 31.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 31.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 31.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 30.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 30.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 30.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 30.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 30.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 30.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 30.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 30.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 29.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 29.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 29.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 29.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 29.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 29.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 29.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 28.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 26.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 26.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 26.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 26.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 26.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 26.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 25.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 25.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 25.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 24.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 24.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 24.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 24.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 24.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 24.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 24.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 24.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 23.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 23.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 22.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 22.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 22.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 22.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 20.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 20.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 20.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 20.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 20.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 20.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 20.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 19.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 19.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 19.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 19.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 18.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 18.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 17.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 17.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 17.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 17.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 16.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 16.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 16.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 15.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 15.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 14.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 14.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 13.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 13.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 13.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 12.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 12.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 12.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 11.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 11.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 10.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 10.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 9.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 8.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 7.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 5.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

190.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 190.3
FF:10164-103B2 76 years, female 190.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

421.3
Pig sample Sample description nTPM
Caudate
nTPM: 421.3
Samples: 4

Max nTPM: 466.8
Min nTPM: 363.1
Sample A Female 413.9
Sample B Female 441.2
Sample C Male 466.8
Sample D Male 363.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org