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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:150.8 nTPM
FANTOM5:61.2 Scaled Tags Per Million
Pig:61.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051461
Glial cells Not detected
Neuronal cells Not detected

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 150.8
Samples: 246

Max nTPM: 474.6
Min nTPM: 26.7
Std nTPM: 68.4
Median nTPM: 134.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 474.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 422.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 407.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 358.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 358.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 333.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 321.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 306.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 296.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 290.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 287.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 279.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 272.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 271.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 264.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 259.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 255.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 254.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 249.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 248.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 247.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 246.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 244.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 242.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 240.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 237.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 236.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 234.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 231.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 230.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 229.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 229.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 226.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 222.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 219.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 218.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 216.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 214.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 213.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 210.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 210.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 209.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 209.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 205.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 205.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 204.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 203.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 202.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 201.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 200.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 195.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 194.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 194.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 192.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 190.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 190.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 187.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 185.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 185.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 184.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 184.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 183.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 183.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 181.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 180.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 179.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 178.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 178.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 178.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 177.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 177.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 177.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 176.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 175.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 173.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 173.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 172.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 170.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 169.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 166.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 165.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 165.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 164.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 163.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 161.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 161.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 160.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 159.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 159.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 159.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 158.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 157.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 157.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 156.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 154.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 151.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 150.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 149.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 147.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 146.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 146.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 146.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 145.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 145.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 144.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 144.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 142.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 140.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 140.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 139.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 139.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 138.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 137.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 136.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 135.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 135.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 135.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 135.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 134.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 134.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 134.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 134.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 134.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 133.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 132.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 131.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 131.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 131.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 131.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 130.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 130.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 130.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 129.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 127.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 126.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 125.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 124.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 124.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 124.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 121.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 121.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 121.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 121.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 120.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 119.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 118.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 118.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 117.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 117.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 116.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 116.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 115.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 113.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 113.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 113.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 113.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 112.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 112.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 111.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 110.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 110.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 108.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 106.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 105.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 105.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 105.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 105.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 105.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 104.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 104.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 103.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 102.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 102.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 101.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 101.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 100.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 100.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 100.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 99.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 98.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 98.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 97.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 97.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 96.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 96.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 95.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 95.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 94.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 94.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 93.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 93.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 93.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 92.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 91.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 91.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 91.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 91.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 90.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 89.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 89.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 89.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 89.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 89.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 86.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 86.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 86.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 85.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 84.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 84.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 84.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 81.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 81.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 81.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 81.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 80.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 80.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 79.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 77.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 77.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 76.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 76.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 75.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 68.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 68.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 67.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 66.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 66.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 64.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 63.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 61.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 55.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 55.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 44.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 41.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 26.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.2
FF:10164-103B2 76 years, female 61.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.1
Pig sample Sample description nTPM
Caudate
nTPM: 61.1
Samples: 4

Max nTPM: 75.2
Min nTPM: 52.5
Sample A Female 54.6
Sample B Female 62.1
Sample C Male 75.2
Sample D Male 52.5

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