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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:374.1 nTPM
GTEx:132.1 nTPM
FANTOM5:504.6 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003140Antibody CAB062566Antibody CAB068245
Glial cells Not detectedNot detectedNot detected
Neuronal cells MediumMediumMedium






HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.1
Sample id Sample description nTPM
Hippocampus
nTPM: 374.1
2621 Female, age 67, right hemisphere 425.7
1898 Male, age 80, left hemisphere 424.0
2148 Female, age 91, left hemisphere 408.6
1855 Male, age 76, left hemisphere 383.9
1911 Female, age 85, right hemisphere 315.5
2529 Female, age 94, left hemisphere 286.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 132.1
Samples: 197

Max nTPM: 371.3
Min nTPM: 17.7
Std nTPM: 83.1
Median nTPM: 117.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 371.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 370.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 358.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 354.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 346.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 339.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 335.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 323.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 319.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 317.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 317.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 305.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 303.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 299.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 295.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 292.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 290.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 271.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 256.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 255.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 254.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 250.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 249.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 247.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 245.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 242.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 228.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 217.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 212.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 211.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 209.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 202.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 199.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 197.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 197.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 196.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 193.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 189.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 185.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 180.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 180.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 179.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 176.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 171.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 171.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 170.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 169.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 169.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 167.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 167.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 166.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 165.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 164.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 163.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 163.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 161.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 161.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 160.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 160.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 159.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 158.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 156.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 156.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 155.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 155.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 153.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 152.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 149.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 147.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 146.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 145.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 144.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 144.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 143.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 141.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 141.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 137.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 137.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 136.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 136.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 136.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 135.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 135.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 133.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 132.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 129.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 128.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 127.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 127.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 126.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 126.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 126.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 125.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 124.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 121.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 118.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 117.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 117.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 117.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 117.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 116.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 116.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 115.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 112.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 112.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 110.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 108.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 108.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 108.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 108.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 108.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 107.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 105.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 103.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 102.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 102.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 100.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 99.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 98.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 97.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 96.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 94.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 93.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 91.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 91.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 90.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 89.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 89.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 89.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 88.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 88.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 87.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 84.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 84.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 84.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 80.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 78.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 78.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 77.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 76.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 76.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 75.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 73.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 73.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 70.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 70.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 66.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 66.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 65.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 65.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 64.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 63.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 63.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 63.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 62.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 62.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 60.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 58.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 58.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 58.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 57.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 57.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 55.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 52.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 51.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 49.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 48.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 46.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 45.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 45.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 45.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 43.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 43.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 41.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 40.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 40.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 39.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 38.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 36.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 36.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 36.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 35.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 34.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 33.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 31.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 31.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 29.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 29.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 28.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 26.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 25.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 25.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 24.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 21.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 18.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 18.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 17.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

504.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 504.6
FF:10169-103B7 60 years, female 669.8
FF:10153-102I9 76 years, female 339.3

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