We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5MJ
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ATP5MJ
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:287.2 nTPM
FANTOM5:179.1 Scaled Tags Per Million
Pig:13.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA058978Antibody HPA060520
Glial cells HighMedium
Neuronal cells HighMedium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 287.2
Samples: 246

Max nTPM: 796.7
Min nTPM: 100.8
Std nTPM: 104.8
Median nTPM: 280.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 796.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 746.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 697.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 653.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 576.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 567.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 561.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 541.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 519.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 505.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 501.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 499.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 466.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 461.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 461.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 456.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 448.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 437.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 434.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 433.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 427.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 424.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 423.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 417.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 405.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 404.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 402.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 392.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 389.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 388.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 388.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 387.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 386.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 386.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 378.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 378.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 376.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 376.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 375.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 373.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 367.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 363.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 363.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 357.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 354.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 354.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 349.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 349.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 348.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 348.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 345.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 345.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 336.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 335.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 333.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 330.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 329.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 329.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 328.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 325.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 324.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 323.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 320.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 320.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 319.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 319.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 317.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 316.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 314.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 312.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 311.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 309.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 309.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 309.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 309.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 308.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 308.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 306.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 306.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 306.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 301.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 300.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 299.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 298.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 297.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 296.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 296.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 295.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 295.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 295.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 294.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 294.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 294.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 294.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 294.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 293.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 293.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 293.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 293.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 293.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 292.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 291.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 290.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 289.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 288.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 288.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 288.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 287.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 287.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 286.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 286.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 286.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 285.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 285.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 285.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 284.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 283.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 283.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 281.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 280.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 280.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 280.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 280.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 279.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 278.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 278.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 277.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 273.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 272.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 272.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 271.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 271.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 271.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 269.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 269.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 269.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 268.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 268.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 267.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 267.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 267.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 266.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 265.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 265.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 264.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 264.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 263.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 262.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 261.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 261.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 257.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 257.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 256.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 255.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 253.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 253.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 252.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 252.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 252.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 251.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 251.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 248.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 245.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 242.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 241.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 240.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 239.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 239.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 238.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 238.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 236.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 235.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 233.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 232.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 227.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 227.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 225.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 225.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 224.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 223.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 220.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 219.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 218.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 217.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 213.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 213.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 211.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 210.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 209.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 209.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 208.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 208.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 207.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 207.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 206.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 206.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 205.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 205.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 202.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 198.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 197.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 197.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 196.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 194.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 191.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 187.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 186.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 186.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 186.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 186.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 184.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 182.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 182.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 181.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 180.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 178.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 176.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 175.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 174.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 174.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 170.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 169.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 168.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 167.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 167.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 166.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 166.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 165.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 165.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 163.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 162.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 153.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 153.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 151.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 150.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 149.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 148.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 148.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 144.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 142.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 142.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 133.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 123.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 118.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 115.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 100.8
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 179.1
FF:10164-103B2 76 years, female 179.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.9
Pig sample Sample description nTPM
Caudate
nTPM: 13.9
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.0
Sample A Female 13.0
Sample B Female 14.2
Sample C Male 14.5
Sample D Male 13.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org