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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:181.7 nTPM
FANTOM5:196.8 Scaled Tags Per Million
Pig:151.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019472Antibody CAB000075Antibody CAB034105
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 181.7
Samples: 246

Max nTPM: 681.6
Min nTPM: 1.3
Std nTPM: 112.1
Median nTPM: 173.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 681.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 481.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 449.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 439.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 434.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 423.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 419.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 416.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 407.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 389.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 385.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 381.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 381.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 368.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 360.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 355.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 350.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 345.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 343.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 342.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 335.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 334.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 331.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 329.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 322.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 319.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 317.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 316.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 315.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 314.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 313.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 312.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 308.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 302.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 302.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 301.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 299.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 298.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 297.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 297.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 294.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 294.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 291.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 291.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 287.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 285.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 284.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 284.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 282.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 281.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 281.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 278.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 277.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 273.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 272.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 271.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 271.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 267.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 266.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 265.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 261.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 260.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 259.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 256.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 256.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 254.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 253.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 253.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 252.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 250.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 248.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 247.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 243.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 243.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 242.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 241.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 241.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 240.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 234.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 234.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 230.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 229.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 229.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 225.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 222.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 221.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 217.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 212.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 212.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 212.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 210.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 207.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 207.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 207.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 206.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 206.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 205.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 201.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 200.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 200.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 199.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 199.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 198.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 197.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 196.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 195.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 195.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 195.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 192.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 189.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 187.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 187.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 186.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 186.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 186.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 184.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 184.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 183.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 182.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 176.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 176.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 176.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 174.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 171.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 171.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 171.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 168.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 163.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 159.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 157.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 156.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 155.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 155.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 152.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 147.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 146.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 146.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 146.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 145.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 144.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 144.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 144.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 143.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 142.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 142.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 142.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 140.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 139.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 139.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 138.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 137.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 135.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 132.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 132.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 131.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 128.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 128.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 127.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 126.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 124.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 123.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 121.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 121.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 118.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 115.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 114.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 114.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 111.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 110.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 109.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 107.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 105.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 102.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 99.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 99.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 96.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 96.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 95.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 95.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 95.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 94.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 93.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 93.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 92.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 91.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 90.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 89.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 87.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 87.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 87.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 87.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 86.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 86.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 81.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 81.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 80.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 76.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 76.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 74.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 72.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 69.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 66.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 65.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 64.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 64.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 63.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 61.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 61.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 60.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 58.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 57.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 57.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 56.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 55.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 53.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 46.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 42.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 41.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 38.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 38.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 32.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 30.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 27.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 26.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 23.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 22.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 21.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 21.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 19.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 18.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 17.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 17.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 16.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 14.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 9.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 9.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 7.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 196.8
FF:10164-103B2 76 years, female 196.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.3
Pig sample Sample description nTPM
Caudate
nTPM: 151.3
Samples: 4

Max nTPM: 163.5
Min nTPM: 139.2
Sample A Female 154.9
Sample B Female 163.5
Sample C Male 147.7
Sample D Male 139.2

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