PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:141.0 nTPM
FANTOM5:155.8 Scaled Tags Per Million
Pig:303.3 nTPM
Mouse:172.1 nTPM
Allen mouse:2.6 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 141.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 104.3
2301 Female, age 85, both hemispheres 113.9
1984 Male, age 76, both hemispheres 108.5
2188 Female, age 91, both hemispheres 101.5
2090 Male, age 80, both hemispheres 93.1
Area postrema
nTPM: 99.0
2054 Male, age 76, both hemispheres 111.2
2306 Male, age 80, both hemispheres 101.6
2799 Male, age 61, both hemispheres 84.3
Dorsal cochlear nucleus
nTPM: 126.0
2370 Male, age 61, both hemispheres 135.9
2378 Male, age 80, both hemispheres 133.1
2802 Male, age 74, right hemisphere 132.5
2187 Female, age 91, both hemispheres 123.5
2058 Male, age 76, both hemispheres 104.9
Dorsal medullary reticular nucleus
nTPM: 116.6
2373 Male, age 61, both hemispheres 131.4
2088 Male, age 76, both hemispheres 120.4
2040 Female, age 85, both hemispheres 98.0
Dorsal motor vagal complex
nTPM: 141.0
2797 Male, age 61, both hemispheres 237.2
2185 Male, age 76, both hemispheres 165.1
2844 Male, age 55, unknown 149.3
2813 Female, age 72, unknown 122.3
2643 Male, age 74, both hemispheres 118.1
2133 Female, age 91, both hemispheres 116.3
2000 Male, age 74, unknown 115.3
2807 Female, age 85, both hemispheres 104.2
Dorsal tegmental nucleus
nTPM: 114.0
2083 Male, age 80, both hemispheres 148.7
1936 Male, age 76, left hemisphere 116.7
2326 Male, age 74, both hemispheres 110.8
2358 Male, age 61, both hemispheres 79.7
Dorsolateral tegmental area
nTPM: 129.8
2141 Male, age 76, both hemispheres 221.1
2751 Female, age 85, both hemispheres 134.7
2654 Male, age 80, both hemispheres 128.5
2360 Male, age 74, both hemispheres 101.9
2337 Male, age 61, both hemispheres 62.9
Gigantocellular reticular nuclei, medullary
nTPM: 106.2
2387 Female, age 91, both hemispheres 126.2
1876 Female, age 85, both hemispheres 124.3
2022 Male, age 76, right hemisphere 118.6
2314 Male, age 61, both hemispheres 100.5
2310 Male, age 80, both hemispheres 85.2
2462 Male, age 74, both hemispheres 82.7
Gigantocellular reticular nuclei, pars
nTPM: 101.4
2084 Female, age 85, both hemispheres 136.9
2336 Male, age 61, both hemispheres 120.2
2706 Male, age 80, both hemispheres 88.4
2330 Male, age 80, both hemispheres 88.2
2168 Male, age 76, both hemispheres 73.4
Inferior olive
nTPM: 137.6
2628 Female, age 91, both hemispheres 156.3
2085 Female, age 85, both hemispheres 155.7
2563 Male, age 74, both hemispheres 150.4
2379 Male, age 80, both hemispheres 117.7
2178 Male, age 61, both hemispheres 107.9
Kolliker-Fuse nucleus
nTPM: 104.7
2793 Female, age 91, left hemisphere 125.5
2163 Male, age 80, both hemispheres 104.9
2315 Male, age 76, right hemisphere 83.6
Lateral lemniscal nuclei
nTPM: 95.2
2320 Female, age 91, left hemisphere 132.4
2453 Male, age 74, right hemisphere 103.0
2169 Male, age 76, both hemispheres 81.6
2036 Male, age 80, both hemispheres 80.3
2746 Female, age 85, left hemisphere 78.8
Lateral medullary reticular nucleus
nTPM: 103.6
2804 Female, age 91, both hemispheres 126.5
2374 Male, age 61, both hemispheres 113.7
2190 Female, age 85, both hemispheres 106.4
2305 Male, age 74, both hemispheres 102.4
2852 Male, age 80, both hemispheres 100.7
2044 Male, age 76, both hemispheres 72.0
Lateral parabrachial nucleus
nTPM: 84.0
2139 Female, age 85, right hemisphere 99.5
2792 Male, age 76, both hemispheres 89.7
2013 Male, age 80, both hemispheres 86.6
2790 Male, age 61, both hemispheres 60.4
Lateral vestibular nucleus
nTPM: 107.4
2311 Male, age 80, both hemispheres 107.8
2184 Male, age 76, both hemispheres 107.0
Locus coeruleus
nTPM: 101.7
2162 Male, age 80, both hemispheres 123.1
2123 Female, age 91, both hemispheres 109.5
2317 Female, age 72, unknown 108.8
1980 Male, age 76, both hemispheres 105.0
2720 Male, age 74, both hemispheres 91.6
2014 Male, age 55, unknown 87.2
2788 Male, age 74, unknown 86.6
Medial olivary nucleus
nTPM: 89.1
2138 Female, age 91, both hemispheres 136.0
2851 Male, age 80, both hemispheres 82.1
1962 Male, age 76, both hemispheres 72.4
1943 Male, age 61, both hemispheres 65.9
Medial parabrachial nucleus
nTPM: 105.8
2786 Male, age 76, both hemispheres 124.9
2463 Female, age 85, right hemisphere 116.3
2170 Female, age 91, both hemispheres 113.6
2854 Male, age 80, both hemispheres 92.0
2156 Male, age 61, both hemispheres 82.0
Medial periolivary nuclei
nTPM: 78.1
2458 Female, age 91, both hemispheres 100.3
2791 Male, age 74, right hemisphere 88.4
2171 Female, age 85, both hemispheres 76.1
2081 Male, age 80, both hemispheres 66.4
2063 Male, age 76, both hemispheres 59.0
Medial vestibular nucleus
nTPM: 117.0
2093 Male, age 80, both hemispheres 149.9
2803 Female, age 91, both hemispheres 132.5
2624 Male, age 61, both hemispheres 116.9
2801 Male, age 74, both hemispheres 116.0
2743 Female, age 85, both hemispheres 100.8
2134 Male, age 76, both hemispheres 85.8
Motor facial nucleus
nTPM: 95.0
2795 Female, age 91, both hemispheres 128.9
2126 Male, age 61, both hemispheres 125.4
2365 Male, age 74, right hemisphere 91.3
2697 Female, age 85, both hemispheres 83.4
2062 Male, age 76, both hemispheres 72.0
2327 Male, age 80, both hemispheres 69.0
Motor hypoglossal nucleus
nTPM: 118.8
2125 Female, age 91, both hemispheres 147.4
2461 Male, age 61, both hemispheres 123.9
2277 Male, age 76, both hemispheres 110.9
2132 Female, age 85, both hemispheres 108.2
2182 Male, age 80, both hemispheres 103.7
Motor trigeminal nucleus
nTPM: 102.0
2321 Female, age 91, both hemispheres 116.9
2560 Male, age 74, both hemispheres 115.7
2309 Male, age 76, both hemispheres 108.6
2335 Male, age 61, both hemispheres 101.8
2079 Male, age 80, both hemispheres 66.9
Nuclei of the trapezoid body
nTPM: 79.0
2368 Female, age 91, both hemispheres 111.6
2166 Male, age 80, both hemispheres 83.5
1983 Male, age 76, both hemispheres 71.2
2735 Female, age 85, both hemispheres 65.0
2159 Male, age 61, both hemispheres 63.6
Nucleus ambiguus
nTPM: 105.1
2096 Female, age 85, both hemispheres 115.9
2071 Male, age 76, both hemispheres 94.3
Nucleus cuneatus
nTPM: 133.4
2562 Male, age 61, both hemispheres 185.5
2564 Male, age 74, both hemispheres 156.3
2100 Male, age 76, both hemispheres 151.5
2805 Female, age 91, both hemispheres 147.8
2381 Male, age 80, both hemispheres 134.7
2131 Male, age 76, both hemispheres 130.2
2380 Male, age 80, both hemispheres 101.5
2376 Male, age 61, both hemispheres 98.7
2808 Female, age 85, both hemispheres 94.6
Nucleus gracilis
nTPM: 110.4
2627 Male, age 74, both hemispheres 117.2
2299 Female, age 85, both hemispheres 108.0
2382 Male, age 80, both hemispheres 106.1
Nucleus raphe magnus
nTPM: 75.8
2455 Male, age 74, both hemispheres 103.8
2459 Female, age 91, both hemispheres 98.8
2328 Male, age 80, both hemispheres 92.0
2160 Male, age 61, both hemispheres 57.4
2051 Male, age 76, both hemispheres 56.4
2172 Female, age 85, both hemispheres 46.0
Nucleus raphe obscurus
nTPM: 87.6
2845 Female, age 85, midline 90.5
2142 Male, age 76, midline 88.2
2800 Male, age 61, midline 84.2
Nucleus raphe pallidus
nTPM: 65.8
2145 Male, age 76, midline 82.1
2183 Male, age 80, midline 75.4
1924 Male, age 61, midline 39.9
Nucleus tractus solitarii
nTPM: 92.7
2656 Male, age 76, both hemispheres 118.3
2191 Female, age 85, both hemispheres 89.8
2144 Female, age 91, right hemisphere 86.8
2307 Male, age 80, both hemispheres 75.9
Paramedian reticular nucleus
nTPM: 91.5
2313 Male, age 61, both hemispheres 112.9
2057 Male, age 80, both hemispheres 89.2
2050 Female, age 85, both hemispheres 85.1
2052 Male, age 76, both hemispheres 78.7
Parvicellular reticular nuclei
nTPM: 90.6
2558 Male, age 74, both hemispheres 101.4
2119 Male, age 80, both hemispheres 87.1
2095 Male, age 76, both hemispheres 83.3
Parvicellular reticular nuclei, medullary
nTPM: 129.6
2181 Male, age 80, left hemisphere 149.5
2091 Female, age 85, both hemispheres 127.4
2189 Female, age 91, both hemispheres 111.8
Pedunculopontine tegmental nucleus
nTPM: 108.1
1921 Female, age 85, both hemispheres 155.9
2334 Male, age 80, both hemispheres 99.9
2338 Male, age 61, both hemispheres 68.4
Peritrigeminal nucleus
nTPM: 85.7
2067 Female, age 85, both hemispheres 94.7
2136 Male, age 76, both hemispheres 82.0
2179 Male, age 61, both hemispheres 80.5
Pontine nuclei
nTPM: 86.0
2454 Male, age 74, left hemisphere 121.1
2319 Female, age 91, both hemispheres 106.2
1863 Male, age 55, unknown 89.7
1968 Male, age 76, left hemisphere 87.7
2109 Female, age 72, unknown 81.6
2115 Male, age 80, left hemisphere 80.2
2787 Female, age 85, both hemispheres 76.0
2727 Male, age 61, right hemisphere 45.7
Pontine raphe nucleus
nTPM: 119.9
2853 Male, age 76, midline 153.9
2122 Female, age 85, midline 85.9
Posteroventral cochlear nucleus
nTPM: 101.5
2371 Male, age 61, both hemispheres 115.6
2752 Female, age 85, both hemispheres 110.6
2135 Female, age 91, both hemispheres 100.7
2070 Male, age 76, both hemispheres 98.2
2341 Male, age 80, both hemispheres 82.6
Prepositus hypoglossal nucleus
nTPM: 113.4
2086 Male, age 80, both hemispheres 127.0
2855 Female, age 85, right hemisphere 99.7
Principal sensory trigeminal nucleus
nTPM: 90.9
2324 Male, age 76, both hemispheres 130.1
2367 Female, age 91, left hemisphere 103.1
2008 Male, age 80, left hemisphere 68.2
2158 Male, age 61, both hemispheres 62.4
Reticular pontine nucleus, caudal
nTPM: 98.8
2559 Male, age 74, both hemispheres 127.5
2457 Female, age 91, both hemispheres 107.7
2092 Male, age 76, both hemispheres 84.7
2332 Male, age 80, right hemisphere 75.4
Reticular pontine nucleus, oral
nTPM: 117.0
2167 Male, age 76, both hemispheres 163.4
2366 Female, age 91, both hemispheres 126.5
1939 Male, age 80, both hemispheres 119.9
2012 Female, age 85, both hemispheres 96.4
2361 Male, age 74, both hemispheres 79.0
Reticulotegmental nucleus
nTPM: 113.0
2452 Male, age 74, both hemispheres 130.2
2322 Female, age 91, both hemispheres 117.5
2333 Male, age 80, both hemispheres 107.2
2325 Male, age 76, both hemispheres 97.3
Spinal trigeminal nucleus, caudal
nTPM: 132.8
2312 Male, age 61, both hemispheres 157.6
2308 Male, age 80, both hemispheres 138.1
2447 Male, age 76, both hemispheres 130.1
2390 Female, age 91, both hemispheres 121.3
2642 Male, age 74, both hemispheres 117.2
Spinal trigeminal nucleus, interpolar
nTPM: 100.1
2386 Female, age 85, both hemispheres 119.5
2625 Male, age 61, both hemispheres 118.2
2389 Female, age 91, both hemispheres 109.8
2033 Male, age 80, both hemispheres 100.2
2066 Male, age 76, right hemisphere 53.0
Spinal trigeminal nucleus, oral
nTPM: 126.5
1978 Male, age 76, both hemispheres 155.3
2737 Female, age 85, both hemispheres 120.1
2164 Male, age 80, both hemispheres 104.2
Spinal vestibular nucleus
nTPM: 125.2
2796 Male, age 61, both hemispheres 147.3
2186 Female, age 91, both hemispheres 138.1
2806 Female, age 85, both hemispheres 124.8
2384 Male, age 74, both hemispheres 116.6
2780 Male, age 80, both hemispheres 116.0
2748 Male, age 76, both hemispheres 108.3
Subcoeruleus area
nTPM: 112.8
2369 Female, age 85, left hemisphere 145.7
2451 Male, age 74, both hemispheres 130.4
2323 Female, age 91, left hemisphere 115.2
1958 Male, age 80, both hemispheres 93.7
2089 Male, age 76, left hemisphere 79.0
Superior olive
nTPM: 91.0
2561 Female, age 91, both hemispheres 112.6
2329 Male, age 80, right hemisphere 95.1
2364 Male, age 74, right hemisphere 90.9
2020 Male, age 76, both hemispheres 84.2
1875 Female, age 85, both hemispheres 72.2
Superior vestibular nucleus
nTPM: 105.0
2061 Male, age 76, both hemispheres 126.3
2015 Male, age 80, both hemispheres 103.1
2383 Male, age 74, both hemispheres 85.6
Ventral medullary reticular nucleus
nTPM: 113.6
2060 Male, age 76, both hemispheres 124.6
2372 Male, age 61, both hemispheres 102.6
Ventral periolivary nuclei
nTPM: 76.0
2794 Female, age 91, left hemisphere 80.1
2023 Male, age 76, both hemispheres 79.0
2165 Male, age 80, both hemispheres 76.4
2130 Female, age 85, both hemispheres 68.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 89.0
2302 Female, age 91, both hemispheres 116.1
2118 Male, age 80, both hemispheres 97.5
2741 Female, age 85, both hemispheres 84.4
2180 Male, age 61, both hemispheres 77.9
1986 Male, age 76, both hemispheres 69.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 94.1
2456 Female, age 91, both hemispheres 120.1
2840 Female, age 85, both hemispheres 103.1
2449 Male, age 74, both hemispheres 94.4
2359 Male, age 61, both hemispheres 93.0
2161 Male, age 80, both hemispheres 78.4
1959 Male, age 76, both hemispheres 75.6

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 155.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 155.8
FF:10182-103D2 60 years, female 202.3
FF:10165-103B3 76 years, female 109.2
Medulla oblongata
Scaled Tags Per Million: 119.8
FF:10038-101F2 18-64 years, mixed 186.1
FF:10155-103A2 76 years, female 89.9
FF:10174-103C3 60 years, female 83.3
Pons
Scaled Tags Per Million: 150.4
FF:10033-101E6 18-54 years, mixed 150.4

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 303.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 257.8
Samples: 4

Max nTPM: 284.2
Min nTPM: 209.4
Sample A Female 284.2
Sample B Female 283.8
Sample C Male 253.6
Sample D Male 209.4
Pons
nTPM: 303.3
Samples: 4

Max nTPM: 490.8
Min nTPM: 217.9
Sample A Female 490.8
Sample B Female 284.6
Sample C Male 217.9
Sample D Male 219.9

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 172.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 172.1
Samples: 4

Max nTPM: 184.4
Min nTPM: 164.7
Sample A Male 184.4
Sample B Male 164.7
Sample C Female 171.4
Sample D Female 167.8

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 2.5
79591685 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 3.6
79904152 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 2.5
477 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 1.4
476 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 0.3
Pons
Expression energy: 2.6
79591685 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 5.5
79904152 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 3.9
477 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 2.5
476 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 0.6
478 Sense, RPS_Baylor_37137, Mouse strain C57BL/6J (56 days, male) 0.0

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