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S100A1
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  • S100A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:766.6 nTPM
FANTOM5:446.6 Scaled Tags Per Million
Pig:1932.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006462Antibody CAB002599
Glial cells HighLow
Neuronal cells -Medium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

766.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 766.6
Samples: 246

Max nTPM: 2305.8
Min nTPM: 49.4
Std nTPM: 376.4
Median nTPM: 691.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2305.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2201.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1827.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1777.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1766.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1722.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1629.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1614.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1602.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1572.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1468.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1467.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1463.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1453.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1433.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1399.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1395.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1395.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1374.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1374.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1354.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1354.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1322.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1316.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1303.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1297.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1293.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1287.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1256.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1251.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1248.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1227.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1197.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1190.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1152.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1151.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1135.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1127.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1126.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1124.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1110.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1098.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1097.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1096.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1089.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1084.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1083.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1072.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1065.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1063.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1048.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1047.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1044.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1028.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1010.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1005.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1001.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 991.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 989.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 986.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 983.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 974.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 960.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 959.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 949.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 938.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 937.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 930.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 929.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 926.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 923.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 921.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 920.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 918.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 901.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 896.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 888.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 887.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 885.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 878.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 877.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 877.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 871.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 871.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 864.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 847.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 827.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 824.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 817.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 813.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 813.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 808.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 807.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 798.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 792.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 791.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 786.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 779.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 776.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 773.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 770.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 764.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 761.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 750.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 749.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 749.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 746.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 739.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 735.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 732.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 725.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 722.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 721.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 720.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 719.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 715.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 710.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 706.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 706.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 699.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 699.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 698.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 693.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 689.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 684.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 682.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 679.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 679.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 678.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 675.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 670.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 667.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 666.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 655.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 652.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 643.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 642.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 640.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 635.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 634.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 630.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 621.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 616.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 610.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 609.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 609.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 609.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 601.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 597.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 587.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 582.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 580.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 577.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 576.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 574.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 572.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 567.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 561.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 555.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 554.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 553.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 551.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 544.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 544.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 543.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 542.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 537.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 537.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 537.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 533.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 532.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 530.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 530.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 526.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 520.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 520.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 516.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 516.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 515.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 514.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 512.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 507.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 506.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 506.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 498.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 497.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 497.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 492.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 490.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 487.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 485.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 484.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 483.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 482.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 479.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 475.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 467.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 464.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 460.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 460.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 457.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 435.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 434.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 428.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 428.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 428.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 425.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 422.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 414.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 407.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 402.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 402.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 399.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 398.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 393.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 389.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 388.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 384.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 382.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 373.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 370.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 366.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 363.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 361.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 356.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 343.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 340.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 332.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 332.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 331.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 329.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 327.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 323.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 305.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 285.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 283.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 282.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 268.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 266.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 254.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 214.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 174.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 147.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 131.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 116.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 49.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

446.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 446.6
FF:10164-103B2 76 years, female 446.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1932.5
Pig sample Sample description nTPM
Caudate
nTPM: 1932.5
Samples: 4

Max nTPM: 2325.0
Min nTPM: 1525.3
Sample A Female 1525.3
Sample B Female 2315.4
Sample C Male 2325.0
Sample D Male 1564.4

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