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FLYWCH2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:33.7 nTPM
FANTOM5:34.1 Scaled Tags Per Million
Pig:7.8 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041354
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.7
Samples: 246

Max nTPM: 69.1
Min nTPM: 14.9
Std nTPM: 7.7
Median nTPM: 33.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 69.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 59.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 55.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 52.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 51.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 50.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 49.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 48.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 47.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 47.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 46.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 46.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 45.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 45.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 45.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 45.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 45.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 44.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 44.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 43.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 43.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 42.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 42.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 42.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 42.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 41.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 41.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 41.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 41.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 41.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 41.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 41.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 41.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 40.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 40.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 40.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 40.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 40.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 40.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 40.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 40.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 40.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 39.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 39.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 39.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 39.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 39.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 39.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 39.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 39.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 39.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 39.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 38.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 38.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 38.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 38.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 38.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 38.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 38.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 38.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 38.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 37.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 37.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 37.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 37.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 37.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 37.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 36.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 36.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 36.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 36.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 36.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 36.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 36.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 36.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 36.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 35.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 35.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 35.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 35.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 35.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 35.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 35.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 34.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 34.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 34.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 34.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 34.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 34.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 34.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 34.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 34.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 34.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 34.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 34.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 34.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 34.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 34.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 34.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 34.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 34.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 34.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 34.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 34.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 34.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 33.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 33.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 33.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 33.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 33.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 33.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 33.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 33.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 33.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 32.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 32.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 32.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 32.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 32.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 32.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 32.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 32.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 32.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 32.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 32.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 32.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 32.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 32.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 31.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 31.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 31.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 31.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 31.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 31.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 31.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 31.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 31.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 31.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 30.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 30.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 30.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 30.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 30.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 30.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 30.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 30.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 30.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 30.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 30.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 30.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 30.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 30.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 30.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 30.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 29.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 29.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 29.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 29.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 29.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 29.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 29.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 29.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 29.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 29.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 29.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 28.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 28.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 28.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 28.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 28.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 28.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 28.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 28.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 28.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 28.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 28.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 28.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 28.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 28.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 28.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 27.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 27.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 27.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 27.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 27.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 27.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 27.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 27.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 27.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 27.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 27.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 26.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 26.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 26.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 26.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 26.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 26.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 26.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 26.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 26.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 25.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 25.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 25.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 25.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 25.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 25.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 24.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 24.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 24.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 24.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 24.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 24.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 24.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 24.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 24.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 23.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 23.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 23.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 23.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 23.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 23.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 22.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 22.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 21.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 20.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 20.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 18.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 18.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 16.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 16.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 14.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.1
FF:10164-103B2 76 years, female 34.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.8
Pig sample Sample description nTPM
Caudate
nTPM: 7.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 7.1
Sample C Male 9.8
Sample D Male 7.5

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