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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

107.009
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:240.3 nTPM
GTEx:87.2 nTPM
FANTOM5:207.1 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002981Antibody CAB025746
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB025746
Hippocampal formation mean intensity 107.009
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 51.079
Molecular layer of the dentate gyrus 62.419
Granular dentate gyrus 60.784
CA1 - oriens layer 65.931
CA1 - pyramidal layer 56.428
CA1 - radiatum layer 72.856
CA2 - oriens layer 90.390
CA2 - pyramidal layer 65.003
CA2 - radiatum layer 84.149
CA3 - oriens layer 107.009
CA3 - pyramidal layer 63.847
CA3 - radiatum layer 99.885
Stratum lucidum 59.497
Lacunosum moleculare 53.788
Subiculum 33.700

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.3
Sample id Sample description nTPM
Hippocampus
nTPM: 240.3
1855 Male, age 76, left hemisphere 337.1
1898 Male, age 80, left hemisphere 289.5
2621 Female, age 67, right hemisphere 252.9
2148 Female, age 91, left hemisphere 228.5
2529 Female, age 94, left hemisphere 181.5
1911 Female, age 85, right hemisphere 152.3

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 87.2
Samples: 197

Max nTPM: 266.1
Min nTPM: 11.6
Std nTPM: 46.9
Median nTPM: 76.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 266.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 230.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 210.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 210.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 196.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 195.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 194.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 190.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 186.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 183.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 172.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 168.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 167.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 166.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 165.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 164.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 163.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 157.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 155.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 154.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 146.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 146.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 142.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 140.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 139.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 139.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 137.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 136.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 135.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 135.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 134.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 133.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 132.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 131.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 129.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 128.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 127.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 127.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 126.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 124.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 124.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 123.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 123.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 123.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 122.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 120.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 119.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 118.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 117.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 116.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 113.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 110.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 110.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 108.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 108.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 108.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 107.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 107.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 106.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 103.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 103.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 102.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 102.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 102.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 102.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 101.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 100.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 99.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 99.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 98.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 98.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 98.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 97.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 96.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 96.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 96.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 96.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 95.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 95.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 93.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 88.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 87.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 87.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 86.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 86.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 86.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 85.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 84.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 84.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 84.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 83.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 81.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 80.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 80.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 80.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 79.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 79.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 78.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 76.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 76.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 75.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 74.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 74.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 74.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 74.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 74.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 73.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 72.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 71.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 71.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 71.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 71.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 71.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 70.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 70.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 70.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 67.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 67.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 67.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 66.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 66.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 66.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 65.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 65.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 64.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 64.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 64.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 63.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 63.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 62.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 61.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 61.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 60.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 60.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 60.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 59.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 59.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 59.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 58.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 58.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 57.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 57.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 56.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 55.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 54.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 54.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 54.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 53.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 52.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 52.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 51.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 50.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 49.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 47.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 47.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 46.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 45.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 43.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 42.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 42.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 41.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 41.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 41.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 40.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 40.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 40.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 38.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 37.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 37.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 36.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 36.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 35.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 34.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 34.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 34.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 33.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 33.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 32.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 32.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 31.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 31.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 30.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 28.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 28.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 28.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 27.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 26.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 26.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 24.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 23.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 21.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 20.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 19.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 19.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 17.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 11.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

207.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 207.1
FF:10169-103B7 60 years, female 264.8
FF:10153-102I9 76 years, female 149.4

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