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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:171.0 nTPM
FANTOM5:130.3 Scaled Tags Per Million
Pig:37.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006949
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 171.0
Samples: 246

Max nTPM: 536.6
Min nTPM: 25.0
Std nTPM: 76.8
Median nTPM: 159.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 536.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 409.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 402.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 377.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 360.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 344.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 342.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 323.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 313.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 311.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 306.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 305.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 301.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 300.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 297.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 297.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 295.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 287.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 285.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 284.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 277.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 275.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 272.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 272.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 272.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 266.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 261.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 260.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 259.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 256.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 256.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 256.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 255.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 253.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 253.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 252.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 250.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 247.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 243.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 242.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 242.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 242.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 242.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 240.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 239.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 239.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 239.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 237.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 236.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 236.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 236.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 234.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 234.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 232.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 231.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 231.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 229.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 228.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 223.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 218.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 218.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 217.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 215.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 212.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 211.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 210.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 209.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 208.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 206.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 205.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 205.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 204.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 204.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 203.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 203.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 203.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 202.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 201.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 200.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 200.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 199.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 199.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 199.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 198.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 195.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 193.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 192.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 192.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 191.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 189.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 188.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 188.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 188.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 187.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 186.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 185.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 185.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 184.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 184.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 183.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 183.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 181.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 179.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 176.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 176.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 175.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 171.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 171.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 171.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 168.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 165.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 165.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 164.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 164.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 164.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 163.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 163.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 162.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 162.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 162.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 162.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 161.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 160.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 159.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 158.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 158.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 157.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 156.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 154.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 154.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 154.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 152.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 151.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 150.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 149.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 148.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 148.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 147.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 147.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 147.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 146.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 145.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 145.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 144.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 144.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 144.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 142.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 139.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 139.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 138.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 138.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 137.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 137.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 136.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 135.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 133.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 133.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 133.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 133.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 132.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 132.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 131.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 130.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 129.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 129.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 129.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 128.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 128.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 127.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 125.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 125.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 125.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 124.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 122.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 122.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 122.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 121.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 121.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 120.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 117.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 117.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 115.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 115.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 113.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 113.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 113.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 112.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 110.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 109.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 109.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 107.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 107.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 106.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 105.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 105.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 104.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 104.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 104.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 104.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 103.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 103.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 103.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 102.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 102.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 100.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 100.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 100.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 99.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 98.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 94.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 93.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 90.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 88.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 88.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 84.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 84.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 83.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 81.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 80.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 77.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 76.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 75.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 74.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 73.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 73.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 65.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 61.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 61.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 59.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 57.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 53.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 48.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 38.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 36.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 33.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 32.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 26.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 25.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 130.3
FF:10164-103B2 76 years, female 130.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
Pig sample Sample description nTPM
Caudate
nTPM: 37.8
Samples: 4

Max nTPM: 48.1
Min nTPM: 30.5
Sample A Female 30.5
Sample B Female 48.1
Sample C Male 40.6
Sample D Male 32.1

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