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  • TISSUE

  • BRAIN

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  • SUBCELL

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  • STRUCT & INT

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:138.2 nTPM
FANTOM5:433.6 Scaled Tags Per Million
Pig:223.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051368Antibody HPA061671
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.2
Samples: 246

Max nTPM: 537.4
Min nTPM: 4.6
Std nTPM: 89.2
Median nTPM: 129.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 537.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 481.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 443.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 354.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 339.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 338.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 315.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 312.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 299.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 299.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 296.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 285.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 282.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 280.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 280.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 273.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 272.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 270.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 263.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 263.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 261.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 259.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 254.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 253.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 249.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 247.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 244.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 243.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 243.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 243.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 243.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 237.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 237.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 231.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 231.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 229.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 228.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 227.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 227.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 226.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 225.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 224.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 224.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 223.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 221.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 217.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 214.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 214.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 209.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 208.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 203.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 202.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 202.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 201.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 200.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 197.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 195.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 194.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 192.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 191.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 191.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 189.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 188.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 188.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 188.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 186.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 186.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 186.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 185.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 183.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 182.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 177.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 174.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 174.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 174.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 173.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 172.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 172.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 171.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 170.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 170.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 169.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 169.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 169.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 168.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 167.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 167.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 166.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 166.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 166.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 164.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 164.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 162.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 160.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 157.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 155.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 155.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 154.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 152.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 152.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 151.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 150.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 148.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 147.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 147.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 146.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 145.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 145.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 144.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 143.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 143.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 139.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 138.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 137.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 137.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 137.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 136.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 135.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 134.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 134.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 133.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 133.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 129.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 129.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 128.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 128.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 128.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 128.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 127.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 126.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 125.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 125.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 124.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 123.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 123.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 123.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 122.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 121.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 118.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 118.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 117.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 117.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 116.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 116.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 115.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 113.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 112.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 112.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 112.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 111.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 111.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 110.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 109.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 107.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 102.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 102.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 102.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 100.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 99.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 98.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 95.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 92.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 92.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 91.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 88.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 88.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 87.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 85.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 84.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 82.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 82.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 81.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 80.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 77.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 76.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 76.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 73.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 71.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 70.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 70.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 69.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 68.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 68.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 65.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 65.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 63.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 62.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 61.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 60.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 60.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 57.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 53.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 53.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 51.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 50.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 49.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 47.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 46.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 46.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 46.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 45.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 44.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 43.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 40.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 40.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 39.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 38.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 35.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 33.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 32.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 28.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 28.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 26.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 26.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 25.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 24.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 21.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 20.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 20.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 20.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 18.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 18.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 17.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 15.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 15.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 13.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 12.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 10.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 10.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 7.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 5.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

433.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 433.6
FF:10164-103B2 76 years, female 433.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.7
Pig sample Sample description nTPM
Caudate
nTPM: 223.7
Samples: 4

Max nTPM: 259.4
Min nTPM: 180.0
Sample A Female 180.0
Sample B Female 211.7
Sample C Male 259.4
Sample D Male 243.6

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