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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:47.3 nTPM
FANTOM5:128.0 Scaled Tags Per Million
Pig:32.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026964
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.3
Samples: 246

Max nTPM: 103.1
Min nTPM: 17.1
Std nTPM: 13.8
Median nTPM: 46.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 103.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 96.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 95.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 93.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 90.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 89.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 79.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 78.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 76.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 73.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 72.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 71.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 69.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 68.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 66.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 66.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 65.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 65.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 64.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 64.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 63.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 63.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 62.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 62.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 62.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 62.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 62.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 61.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 61.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 61.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 60.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 60.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 60.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 60.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 59.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 59.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 58.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 58.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 58.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 58.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 57.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 57.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 57.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 57.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 56.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 56.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 56.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 56.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 55.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 55.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 55.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 55.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 55.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 55.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 55.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 54.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 54.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 54.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 54.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 53.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 53.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 53.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 52.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 52.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 52.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 52.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 52.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 52.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 52.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 52.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 51.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 51.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 51.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 51.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 51.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 51.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 51.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 51.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 51.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 51.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 51.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 51.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 51.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 50.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 50.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 50.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 50.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 50.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 50.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 50.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 50.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 50.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 49.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 49.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 49.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 49.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 49.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 49.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 49.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 49.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 49.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 49.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 49.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 48.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 48.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 48.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 48.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 48.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 48.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 48.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 48.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 48.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 47.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 47.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 47.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 47.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 47.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 46.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 46.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 46.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 46.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 46.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 46.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 46.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 46.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 46.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 46.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 46.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 46.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 46.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 45.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 45.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 45.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 45.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 45.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 44.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 44.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 44.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 44.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 44.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 44.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 43.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 43.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 43.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 43.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 43.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 43.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 42.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 42.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 42.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 42.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 42.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 42.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 41.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 41.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 41.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 41.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 41.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 41.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 41.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 41.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 40.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 40.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 40.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 40.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 40.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 40.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 39.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 38.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 38.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 38.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 38.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 38.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 38.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 38.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 38.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 37.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 37.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 37.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 37.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 37.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 37.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 37.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 37.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 37.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 36.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 36.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 36.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 36.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 36.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 36.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 36.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 36.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 35.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 35.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 35.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 35.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 34.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 33.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 33.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 33.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 32.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 32.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 32.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 31.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 31.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 31.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 31.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 31.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 30.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 30.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 30.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 29.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 29.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 29.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 29.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 29.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 28.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 28.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 28.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 28.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 28.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 28.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 27.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 26.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 26.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 26.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 25.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 25.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 24.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 22.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 20.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 19.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.0
FF:10164-103B2 76 years, female 128.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.8
Pig sample Sample description nTPM
Caudate
nTPM: 32.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 32.5
Sample C Male 39.7
Sample D Male 31.4

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