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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:47.1 nTPM
GTEx:38.0 nTPM
FANTOM5:92.1 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA074530
Glial cells High
Neuronal cells High



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.1
Sample id Sample description nTPM
Hippocampus
nTPM: 47.1
1855 Male, age 76, left hemisphere 79.9
1898 Male, age 80, left hemisphere 74.7
2621 Female, age 67, right hemisphere 62.8
1911 Female, age 85, right hemisphere 36.3
2148 Female, age 91, left hemisphere 20.7
2529 Female, age 94, left hemisphere 8.5

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.0
Samples: 197

Max nTPM: 192.1
Min nTPM: 1.0
Std nTPM: 38.0
Median nTPM: 25.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 192.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 178.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 159.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 139.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 137.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 127.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 124.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 124.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 122.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 121.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 114.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 113.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 112.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 112.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 111.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 110.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 110.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 104.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 101.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 99.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 99.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 92.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 88.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 86.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 84.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 84.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 83.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 82.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 82.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 81.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 79.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 79.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 77.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 73.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 72.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 71.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 70.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 68.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 67.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 65.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 65.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 59.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 59.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 58.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 57.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 56.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 55.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 54.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 54.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 50.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 49.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 49.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 48.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 46.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 45.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 45.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 44.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 44.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 41.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 40.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 39.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 39.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 39.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 38.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 38.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 37.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 37.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 37.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 37.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 36.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 36.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 36.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 35.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 34.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 34.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 34.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 34.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 33.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 33.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 33.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 32.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 31.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 31.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 30.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 30.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 30.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 29.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 29.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 29.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 29.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 28.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 27.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 26.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 26.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 26.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 25.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 25.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 25.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 25.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 24.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 24.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 24.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 23.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 23.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 23.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 22.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 22.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 22.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 21.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 21.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 20.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 20.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 20.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 20.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 19.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 19.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 18.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 18.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 18.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 18.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 18.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 18.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 18.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 17.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 17.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 17.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 17.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 17.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 17.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 16.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 16.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 15.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 14.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 13.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 13.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 13.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 12.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 12.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 12.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 11.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 11.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 11.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 10.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 10.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 10.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 10.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 9.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 9.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 9.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 9.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 8.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 8.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 8.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 8.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 8.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 8.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 8.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 8.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 8.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 6.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 6.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 6.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 6.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 5.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 5.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 5.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 5.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 5.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 5.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 5.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 5.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 4.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 4.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 4.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 4.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 4.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 3.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 3.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 3.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 3.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 3.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 3.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 2.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 2.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 2.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 2.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 1.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.1
FF:10169-103B7 60 years, female 142.2
FF:10153-102I9 76 years, female 41.9

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