We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ALDH7A1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ALDH7A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:76.3 nTPM
FANTOM5:113.7 Scaled Tags Per Million
Pig:46.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023296Antibody HPA053675
Glial cells HighMedium
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 76.3
Samples: 246

Max nTPM: 198.0
Min nTPM: 10.1
Std nTPM: 33.0
Median nTPM: 72.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 198.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 192.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 187.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 166.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 166.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 165.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 152.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 150.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 146.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 146.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 145.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 137.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 136.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 131.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 129.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 127.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 127.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 126.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 125.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 124.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 123.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 122.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 121.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 120.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 119.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 117.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 115.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 113.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 113.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 111.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 110.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 110.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 109.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 108.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 108.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 107.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 107.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 106.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 106.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 105.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 105.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 104.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 104.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 104.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 103.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 103.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 102.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 102.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 102.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 101.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 100.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 100.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 100.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 98.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 98.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 97.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 97.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 96.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 96.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 95.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 94.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 94.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 93.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 93.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 93.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 93.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 92.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 92.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 92.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 91.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 91.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 91.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 90.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 90.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 90.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 89.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 89.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 88.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 87.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 87.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 86.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 86.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 85.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 84.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 84.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 84.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 83.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 82.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 82.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 82.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 81.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 81.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 80.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 80.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 80.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 80.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 79.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 78.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 78.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 78.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 78.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 78.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 77.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 77.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 77.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 76.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 76.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 75.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 75.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 75.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 75.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 74.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 74.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 74.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 73.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 73.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 73.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 73.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 73.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 73.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 72.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 72.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 72.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 71.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 70.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 70.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 70.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 70.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 69.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 68.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 68.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 68.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 68.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 68.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 68.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 67.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 67.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 67.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 67.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 66.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 66.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 66.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 65.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 65.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 65.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 64.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 64.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 63.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 63.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 63.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 62.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 62.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 62.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 62.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 61.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 61.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 60.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 60.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 59.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 59.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 59.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 59.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 59.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 58.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 58.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 58.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 57.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 56.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 56.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 56.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 55.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 55.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 54.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 54.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 54.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 54.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 54.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 54.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 53.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 53.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 52.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 51.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 51.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 51.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 51.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 51.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 51.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 51.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 50.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 50.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 48.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 48.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 48.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 47.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 47.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 47.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 46.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 46.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 46.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 46.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 46.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 45.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 45.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 44.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 44.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 43.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 42.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 42.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 42.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 42.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 41.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 41.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 41.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 40.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 40.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 39.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 38.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 37.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 36.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 35.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 35.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 34.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 34.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 34.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 33.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 28.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 27.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 27.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 27.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 26.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 23.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 22.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 20.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 14.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 12.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 10.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.7
FF:10164-103B2 76 years, female 113.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.6
Pig sample Sample description nTPM
Caudate
nTPM: 46.6
Samples: 4

Max nTPM: 49.5
Min nTPM: 41.0
Sample A Female 47.7
Sample B Female 48.3
Sample C Male 49.5
Sample D Male 41.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org