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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:266.3 nTPM
FANTOM5:490.2 Scaled Tags Per Million
Pig:829.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB005065
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 266.3
Samples: 246

Max nTPM: 782.4
Min nTPM: 105.6
Std nTPM: 112.5
Median nTPM: 252.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 782.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 664.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 545.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 536.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 498.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 498.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 495.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 489.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 488.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 483.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 469.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 467.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 466.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 462.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 461.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 454.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 446.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 442.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 439.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 434.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 430.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 429.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 429.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 421.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 421.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 418.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 416.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 415.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 415.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 412.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 407.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 405.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 404.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 403.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 394.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 393.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 392.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 390.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 384.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 380.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 378.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 378.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 377.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 369.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 369.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 368.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 368.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 367.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 366.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 364.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 357.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 356.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 355.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 355.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 347.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 343.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 342.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 341.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 340.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 338.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 338.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 336.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 336.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 334.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 333.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 328.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 324.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 324.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 324.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 323.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 318.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 318.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 318.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 315.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 315.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 314.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 314.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 313.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 312.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 311.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 311.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 310.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 309.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 309.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 306.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 305.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 304.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 303.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 302.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 301.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 297.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 295.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 295.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 287.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 287.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 282.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 281.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 281.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 280.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 279.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 278.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 276.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 275.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 272.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 272.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 267.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 266.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 266.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 265.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 265.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 264.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 261.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 261.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 260.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 260.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 259.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 258.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 257.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 256.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 255.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 255.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 254.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 253.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 251.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 248.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 248.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 247.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 246.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 245.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 242.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 239.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 239.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 239.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 235.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 234.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 233.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 231.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 228.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 227.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 227.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 227.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 226.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 225.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 224.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 223.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 221.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 219.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 219.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 217.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 214.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 213.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 213.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 211.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 210.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 210.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 209.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 209.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 209.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 208.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 206.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 205.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 199.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 199.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 197.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 197.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 195.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 194.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 194.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 194.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 191.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 190.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 188.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 188.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 185.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 185.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 185.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 182.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 180.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 180.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 179.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 177.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 177.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 176.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 175.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 174.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 171.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 169.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 168.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 167.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 167.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 166.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 166.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 166.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 164.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 162.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 162.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 161.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 160.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 158.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 158.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 156.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 154.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 153.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 153.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 152.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 152.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 150.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 150.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 150.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 149.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 148.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 143.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 142.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 142.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 139.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 139.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 139.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 138.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 134.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 134.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 133.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 129.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 129.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 127.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 127.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 127.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 126.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 126.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 126.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 125.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 124.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 124.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 121.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 120.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 116.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 116.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 113.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 111.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 111.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 111.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 109.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 109.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 106.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 105.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

490.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 490.2
FF:10164-103B2 76 years, female 490.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

829.4
Pig sample Sample description nTPM
Caudate
nTPM: 829.4
Samples: 4

Max nTPM: 962.7
Min nTPM: 750.6
Sample A Female 806.1
Sample B Female 798.0
Sample C Male 962.7
Sample D Male 750.6

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