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NDRG2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1676.1 nTPM
FANTOM5:878.1 Scaled Tags Per Million
Pig:359.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002896Antibody HPA003590Antibody CAB017491
Glial cells MediumHighMedium
Neuronal cells Not detectedLowNot detected






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1676.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1676.1
Samples: 246

Max nTPM: 3904.7
Min nTPM: 214.3
Std nTPM: 647.8
Median nTPM: 1542.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 3904.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 3625.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 3551.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3520.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3330.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3306.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 3221.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3063.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3031.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2952.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2907.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2904.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2846.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2846.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2818.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2803.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2800.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2749.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2715.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2701.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 2675.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2655.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2645.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2617.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2605.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2585.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2527.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2523.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2520.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2503.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2501.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2496.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2455.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 2421.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 2411.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2405.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2378.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2356.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2351.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2343.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2338.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 2335.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2328.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2300.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2288.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 2276.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2275.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 2246.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 2244.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2222.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2203.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2168.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2155.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2138.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2118.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2106.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 2077.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2072.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2070.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 2069.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2068.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2041.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2028.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 2018.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 2007.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 2001.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1996.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1992.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1989.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1988.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1974.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1939.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1929.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1919.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1907.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1899.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1897.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1888.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1845.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1843.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1836.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1814.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1812.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1804.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1802.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1797.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1787.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1772.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1755.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1753.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1734.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1728.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1727.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1726.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1723.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1719.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1718.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1709.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1706.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1693.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1686.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1678.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1674.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1673.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1671.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1670.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1668.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1653.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1653.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1643.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1640.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1637.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1629.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1628.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1615.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1614.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1613.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1609.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1604.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1569.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1566.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1547.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1543.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1540.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1537.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1536.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1532.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1531.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1528.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1524.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1523.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1520.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1520.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1517.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1516.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1514.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1511.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1499.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1486.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1481.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1476.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1475.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1469.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1467.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1463.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1462.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1441.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1437.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1411.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1409.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1406.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1400.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1400.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1399.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1394.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1388.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1387.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1384.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1378.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1376.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1375.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1374.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1374.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1366.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1333.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1333.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1328.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1323.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1320.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1319.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1311.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1306.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1305.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1303.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1297.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1296.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1286.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1281.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1266.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1264.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1264.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1239.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1233.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1229.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1217.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1214.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1210.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1185.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1184.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1182.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1169.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1165.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1161.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1157.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1151.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1151.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1145.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1143.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1140.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1140.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1119.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1117.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1116.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1088.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1074.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1064.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1060.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1035.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1025.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1023.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1018.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1015.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1011.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1011.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 996.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 995.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 989.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 987.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 985.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 980.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 979.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 979.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 975.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 968.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 967.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 953.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 936.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 906.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 891.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 877.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 850.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 837.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 823.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 810.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 766.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 746.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 740.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 717.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 710.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 705.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 655.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 625.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 443.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 413.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 377.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 214.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

878.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 878.1
FF:10164-103B2 76 years, female 878.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

359.3
Pig sample Sample description nTPM
Caudate
nTPM: 359.3
Samples: 4

Max nTPM: 411.4
Min nTPM: 302.0
Sample A Female 331.5
Sample B Female 392.2
Sample C Male 411.4
Sample D Male 302.0

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