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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:962.2 nTPM
GTEx:1457.1 nTPM
FANTOM5:1817.3 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002896Antibody HPA003590Antibody CAB017491
Glial cells MediumHighMedium
Neuronal cells Not detectedLowNot detected







HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

962.2
Sample id Sample description nTPM
Hippocampus
nTPM: 962.2
1911 Female, age 85, right hemisphere 1088.7
2529 Female, age 94, left hemisphere 1083.1
2148 Female, age 91, left hemisphere 1057.4
1898 Male, age 80, left hemisphere 932.8
2621 Female, age 67, right hemisphere 839.5
1855 Male, age 76, left hemisphere 771.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1457.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1457.1
Samples: 197

Max nTPM: 3490.5
Min nTPM: 161.5
Std nTPM: 530.6
Median nTPM: 1406.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 3490.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 3065.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 3003.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 2886.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 2803.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 2647.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 2560.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2558.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 2469.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 2446.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 2427.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 2421.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 2415.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 2411.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 2294.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 2208.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 2203.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2189.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 2154.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2149.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 2075.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 2069.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2049.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 2048.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 2012.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 2010.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 2006.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1999.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1990.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1986.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1981.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1955.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 1927.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 1921.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1875.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1868.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 1863.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1859.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1850.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1846.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1824.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1817.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1803.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1801.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1793.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 1785.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1782.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1779.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 1774.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 1756.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1756.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1733.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 1732.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1724.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 1677.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1671.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 1664.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1662.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1661.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1661.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1653.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1649.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1641.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1634.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 1628.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1623.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1617.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1616.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1615.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1596.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1594.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1586.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1580.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1577.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1577.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1558.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1556.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1554.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1545.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1545.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1531.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 1527.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 1499.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1498.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1491.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1487.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1486.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1476.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 1471.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1468.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1456.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 1453.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1452.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1442.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1432.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 1432.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1430.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1427.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 1406.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 1401.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1396.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 1393.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1387.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1371.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1370.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 1363.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1354.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1346.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 1345.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 1341.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 1328.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1325.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1320.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1305.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 1296.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1281.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1280.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1279.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1254.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 1251.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1245.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1227.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 1210.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1199.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 1178.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1177.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1174.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 1172.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 1171.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 1170.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1157.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1151.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1151.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1142.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1136.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1130.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1119.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1114.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1113.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1111.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1108.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1103.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 1103.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 1092.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1091.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1089.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 1086.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 1081.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1076.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1076.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1065.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1064.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1062.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1054.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 1051.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 1028.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 1022.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1018.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 1017.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1015.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1006.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1004.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 995.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 994.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 990.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 988.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 960.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 959.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 955.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 944.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 935.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 931.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 927.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 922.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 907.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 898.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 897.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 897.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 893.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 891.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 875.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 819.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 812.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 794.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 775.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 744.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 744.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 718.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 712.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 602.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 566.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 552.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 544.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 519.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 503.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 449.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 161.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1817.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1817.3
FF:10169-103B7 60 years, female 2013.8
FF:10153-102I9 76 years, female 1620.9

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