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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:118.9 nTPM
FANTOM5:177.4 Scaled Tags Per Million
Pig:164.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044316
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 118.9
Samples: 246

Max nTPM: 341.4
Min nTPM: 39.1
Std nTPM: 39.7
Median nTPM: 113.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 341.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 261.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 234.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 208.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 207.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 204.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 201.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 198.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 195.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 192.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 190.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 186.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 185.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 184.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 183.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 179.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 178.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 178.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 176.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 175.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 174.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 171.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 171.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 169.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 166.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 166.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 165.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 165.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 164.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 163.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 162.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 161.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 161.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 161.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 159.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 159.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 159.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 159.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 158.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 158.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 157.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 157.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 156.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 153.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 153.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 152.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 152.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 151.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 150.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 149.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 148.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 147.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 147.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 146.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 146.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 146.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 145.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 145.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 143.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 143.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 142.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 142.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 142.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 140.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 140.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 140.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 139.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 139.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 139.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 139.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 139.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 138.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 137.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 136.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 135.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 134.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 134.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 132.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 131.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 131.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 128.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 128.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 127.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 127.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 127.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 126.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 125.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 125.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 124.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 124.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 124.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 124.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 123.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 123.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 122.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 122.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 122.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 122.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 122.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 122.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 122.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 120.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 120.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 119.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 118.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 118.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 118.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 117.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 117.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 115.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 115.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 115.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 115.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 114.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 114.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 114.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 113.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 113.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 113.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 113.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 113.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 113.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 113.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 111.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 111.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 111.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 111.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 110.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 110.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 109.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 109.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 109.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 108.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 108.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 107.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 107.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 107.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 107.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 106.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 106.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 105.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 105.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 105.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 104.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 104.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 104.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 103.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 102.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 102.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 102.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 101.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 100.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 100.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 100.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 100.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 100.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 99.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 99.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 98.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 97.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 97.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 97.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 97.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 96.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 96.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 96.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 96.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 95.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 94.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 94.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 94.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 92.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 92.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 92.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 92.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 91.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 91.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 90.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 90.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 90.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 90.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 90.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 90.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 89.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 89.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 89.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 88.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 88.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 88.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 88.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 87.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 86.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 86.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 85.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 85.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 85.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 84.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 84.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 84.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 83.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 82.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 81.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 81.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 80.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 79.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 79.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 79.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 76.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 76.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 76.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 76.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 76.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 76.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 74.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 70.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 68.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 67.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 66.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 64.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 64.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 64.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 60.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 59.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 59.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 58.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 57.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 53.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 53.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 51.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 50.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 50.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 39.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 39.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

177.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 177.4
FF:10164-103B2 76 years, female 177.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.9
Pig sample Sample description nTPM
Caudate
nTPM: 164.9
Samples: 4

Max nTPM: 225.5
Min nTPM: 106.4
Sample A Female 106.4
Sample B Female 166.7
Sample C Male 225.5
Sample D Male 161.0

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