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CACNB2
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  • CACNB2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:7.9 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Pig:46.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035326
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 22.9
Min nTPM: 0.1
Std nTPM: 4.7
Median nTPM: 7.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 22.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 22.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 22.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 19.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 18.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 18.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 16.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 16.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 16.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 15.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 15.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 15.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 15.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 14.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 14.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 14.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 14.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 14.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 14.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 14.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 14.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 14.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 14.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 13.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 13.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 13.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 13.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 13.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 13.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 12.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 12.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 12.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 12.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 12.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 12.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 12.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 12.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 12.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 12.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 12.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 12.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 12.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 12.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 12.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 12.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 12.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 12.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 12.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 12.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 12.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 11.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 11.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 11.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 11.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 11.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 11.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 11.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 11.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 11.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 11.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 11.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 11.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 11.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 11.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 11.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 11.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 11.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 11.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 11.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 11.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 11.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 11.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 11.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 10.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 10.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 10.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 10.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 10.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 10.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 10.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 10.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 10.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 10.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 10.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 10.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 10.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 10.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 10.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 10.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 10.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 9.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 9.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 9.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 9.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 9.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 9.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 9.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 9.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 9.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 9.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 9.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 9.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 9.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 9.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 9.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 9.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 8.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 8.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 8.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 8.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 8.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 8.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 8.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 8.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 8.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 8.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 8.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 8.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 8.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 8.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 7.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 7.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 7.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 7.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 7.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 7.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 7.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 7.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 7.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 7.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 7.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 7.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 7.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 7.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 7.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 7.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 7.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 7.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 6.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 6.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 6.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 6.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 6.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 6.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 6.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 6.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 6.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 6.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 6.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 6.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 6.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 5.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 5.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 5.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 5.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 5.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 5.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 5.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 5.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 5.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 5.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 5.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 5.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 5.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 5.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 4.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 4.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 4.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 4.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 4.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 4.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 4.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 4.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 4.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 4.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 4.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 3.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 3.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 3.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 3.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 3.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 2.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 2.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 2.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 0.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 0.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 0.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 0.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 0.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 0.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 0.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 0.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 0.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.0
FF:10164-103B2 76 years, female 50.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.5
Pig sample Sample description nTPM
Caudate
nTPM: 46.5
Samples: 4

Max nTPM: 50.3
Min nTPM: 42.2
Sample A Female 42.2
Sample B Female 44.4
Sample C Male 50.3
Sample D Male 49.1

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