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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:845.1 nTPM
FANTOM5:4265.0 Scaled Tags Per Million
Pig:1154.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001254Antibody CAB047313
Glial cells LowMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

845.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 845.1
Samples: 246

Max nTPM: 1815.0
Min nTPM: 257.1
Std nTPM: 270.7
Median nTPM: 847.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1815.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1565.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1485.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1463.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1412.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1408.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1404.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1394.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1385.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1369.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1352.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1339.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1335.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1327.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1290.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1284.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1281.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1277.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1263.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1255.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1240.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1237.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1233.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1225.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1214.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1211.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1211.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1211.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1204.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1171.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1169.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1164.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1158.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1156.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1142.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1138.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1134.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1132.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1125.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1109.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1097.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1089.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1086.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1072.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1071.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1060.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1057.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1051.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1050.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1049.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1047.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1042.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1034.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1033.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1030.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1029.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1028.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1025.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1015.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1012.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1011.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1010.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1010.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1009.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1006.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1000.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 994.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 993.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 992.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 989.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 986.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 985.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 984.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 982.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 982.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 981.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 981.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 974.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 972.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 962.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 959.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 957.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 954.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 949.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 943.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 943.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 937.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 936.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 933.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 930.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 930.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 930.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 926.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 924.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 922.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 920.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 917.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 916.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 914.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 912.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 908.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 908.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 908.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 905.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 903.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 902.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 899.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 899.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 895.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 890.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 880.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 877.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 876.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 871.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 868.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 868.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 867.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 867.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 863.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 863.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 861.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 852.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 849.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 846.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 845.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 839.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 825.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 822.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 819.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 813.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 812.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 811.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 803.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 797.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 793.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 793.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 792.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 786.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 782.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 779.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 773.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 768.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 767.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 764.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 760.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 756.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 751.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 750.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 743.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 741.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 737.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 737.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 737.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 735.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 731.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 725.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 720.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 717.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 712.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 712.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 707.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 702.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 700.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 693.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 691.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 679.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 678.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 676.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 675.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 673.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 670.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 669.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 659.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 658.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 657.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 655.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 655.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 654.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 654.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 649.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 648.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 644.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 643.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 641.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 641.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 638.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 637.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 635.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 633.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 630.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 622.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 622.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 619.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 611.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 611.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 611.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 601.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 600.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 597.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 589.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 587.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 586.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 578.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 574.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 571.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 566.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 566.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 565.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 563.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 562.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 558.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 555.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 552.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 549.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 546.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 534.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 531.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 530.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 529.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 529.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 528.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 527.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 525.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 502.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 500.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 491.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 482.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 473.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 471.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 454.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 442.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 439.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 435.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 432.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 430.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 429.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 427.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 420.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 411.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 405.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 380.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 347.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 336.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 328.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 273.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 257.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4265.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4265.0
FF:10164-103B2 76 years, female 4265.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1154.7
Pig sample Sample description nTPM
Caudate
nTPM: 1154.7
Samples: 4

Max nTPM: 1499.6
Min nTPM: 847.8
Sample A Female 847.8
Sample B Female 1217.6
Sample C Male 1499.6
Sample D Male 1053.9

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