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TMEM130
HPA
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:84.9 nTPM
FANTOM5:225.8 Scaled Tags Per Million
Pig:170.6 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012928
Glial cells Not detected
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 84.9
Samples: 246

Max nTPM: 242.3
Min nTPM: 6.0
Std nTPM: 53.0
Median nTPM: 83.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 242.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 209.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 204.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 196.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 195.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 189.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 187.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 185.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 181.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 179.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 178.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 177.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 176.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 175.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 173.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 172.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 171.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 171.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 169.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 168.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 165.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 161.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 160.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 160.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 157.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 154.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 154.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 154.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 154.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 153.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 152.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 152.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 152.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 150.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 149.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 147.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 147.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 146.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 145.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 145.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 144.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 143.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 142.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 142.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 141.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 141.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 138.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 136.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 133.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 132.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 131.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 128.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 127.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 127.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 126.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 124.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 124.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 124.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 124.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 120.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 119.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 119.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 118.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 118.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 116.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 116.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 116.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 115.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 114.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 114.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 114.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 114.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 113.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 111.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 110.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 110.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 109.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 109.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 108.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 107.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 107.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 107.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 107.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 107.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 106.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 105.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 105.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 104.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 104.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 103.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 103.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 103.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 102.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 102.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 101.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 101.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 101.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 100.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 99.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 95.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 93.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 93.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 91.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 90.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 90.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 90.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 89.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 89.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 89.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 88.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 88.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 88.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 87.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 87.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 86.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 85.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 85.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 84.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 84.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 83.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 83.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 81.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 80.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 80.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 80.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 77.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 77.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 76.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 76.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 74.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 72.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 72.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 71.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 71.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 71.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 71.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 69.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 69.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 69.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 69.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 67.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 67.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 67.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 66.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 65.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 64.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 63.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 62.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 62.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 62.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 60.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 60.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 59.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 57.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 55.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 55.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 54.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 53.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 53.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 53.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 53.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 51.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 51.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 47.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 46.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 44.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 42.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 40.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 40.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 39.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 38.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 37.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 37.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 36.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 36.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 36.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 35.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 34.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 34.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 34.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 33.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 33.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 32.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 32.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 32.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 31.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 30.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 30.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 29.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 29.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 29.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 28.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 28.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 28.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 28.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 28.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 25.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 25.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 25.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 25.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 24.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 23.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 23.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 22.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 22.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 21.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 21.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 20.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 17.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 17.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 17.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 17.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 16.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 16.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 15.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 15.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 13.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 13.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 12.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 12.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 12.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 12.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 11.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 10.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 9.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 9.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 7.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 7.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 6.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

225.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 225.8
FF:10164-103B2 76 years, female 225.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.6
Pig sample Sample description nTPM
Caudate
nTPM: 170.6
Samples: 4

Max nTPM: 202.7
Min nTPM: 130.7
Sample A Female 130.7
Sample B Female 179.2
Sample C Male 202.7
Sample D Male 169.9

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