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  • HSP90B1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:149.9 nTPM
FANTOM5:385.9 Scaled Tags Per Million
Pig:118.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003901Antibody HPA008424Antibody CAB005224
Glial cells HighHighHigh
Neuronal cells -HighHigh






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 149.9
Samples: 246

Max nTPM: 396.0
Min nTPM: 85.9
Std nTPM: 47.6
Median nTPM: 137.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 396.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 367.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 351.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 307.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 286.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 284.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 276.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 272.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 270.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 268.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 263.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 253.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 246.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 243.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 243.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 242.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 231.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 229.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 225.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 224.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 222.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 221.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 220.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 220.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 217.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 216.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 213.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 210.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 205.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 202.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 197.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 197.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 194.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 190.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 188.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 183.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 183.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 179.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 179.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 178.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 177.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 177.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 177.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 175.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 173.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 173.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 171.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 171.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 170.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 169.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 169.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 169.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 169.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 168.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 168.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 166.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 166.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 165.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 161.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 161.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 160.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 160.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 159.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 158.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 158.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 158.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 158.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 157.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 156.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 155.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 155.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 154.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 154.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 153.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 153.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 153.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 153.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 152.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 152.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 152.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 152.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 151.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 151.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 150.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 150.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 149.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 149.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 149.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 148.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 148.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 148.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 148.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 147.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 147.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 147.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 146.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 146.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 146.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 145.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 145.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 145.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 145.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 144.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 144.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 142.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 142.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 141.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 140.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 140.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 140.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 140.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 140.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 139.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 139.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 139.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 139.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 139.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 138.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 138.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 137.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 137.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 137.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 137.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 136.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 136.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 136.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 136.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 136.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 135.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 135.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 135.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 134.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 134.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 134.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 134.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 133.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 133.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 133.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 132.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 132.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 132.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 132.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 132.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 131.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 131.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 130.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 130.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 130.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 129.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 129.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 129.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 129.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 129.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 129.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 128.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 128.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 127.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 127.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 127.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 126.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 126.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 126.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 126.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 125.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 125.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 125.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 125.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 124.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 124.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 124.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 124.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 124.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 123.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 123.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 123.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 122.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 122.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 121.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 121.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 120.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 120.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 119.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 119.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 119.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 118.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 118.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 118.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 118.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 117.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 117.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 117.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 117.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 116.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 116.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 116.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 116.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 115.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 114.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 114.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 114.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 113.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 112.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 112.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 111.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 110.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 110.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 110.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 109.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 109.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 109.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 109.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 108.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 108.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 107.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 106.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 106.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 106.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 106.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 106.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 106.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 106.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 105.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 105.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 104.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 104.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 104.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 104.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 103.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 103.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 103.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 101.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 101.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 99.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 99.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 99.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 98.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 96.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 95.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 94.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 93.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 89.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 85.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

385.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 385.9
FF:10164-103B2 76 years, female 385.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.3
Pig sample Sample description nTPM
Caudate
nTPM: 118.3
Samples: 4

Max nTPM: 123.9
Min nTPM: 108.0
Sample A Female 123.9
Sample B Female 108.0
Sample C Male 120.2
Sample D Male 121.0

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