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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:24.9 nTPM
FANTOM5:11.9 Scaled Tags Per Million
Pig:14.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045919
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.9
Samples: 246

Max nTPM: 74.9
Min nTPM: 0.7
Std nTPM: 12.8
Median nTPM: 22.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 74.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 67.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 66.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 62.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 56.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 56.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 53.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 53.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 51.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 50.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 50.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 49.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 48.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 47.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 47.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 47.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 47.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 47.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 46.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 46.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 44.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 44.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 42.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 42.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 41.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 40.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 38.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 37.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 37.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 37.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 37.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 37.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 36.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 36.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 36.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 36.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 36.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 36.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 35.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 35.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 35.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 35.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 35.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 35.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 35.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 35.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 35.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 34.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 34.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 34.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 34.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 33.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 33.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 33.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 33.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 33.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 32.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 32.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 32.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 31.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 31.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 31.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 31.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 31.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 30.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 30.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 30.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 30.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 30.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 29.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 29.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 29.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 29.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 29.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 29.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 29.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 29.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 29.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 29.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 29.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 28.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 28.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 28.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 28.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 28.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 27.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 27.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 27.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 26.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 26.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 26.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 26.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 26.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 25.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 25.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 25.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 25.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 25.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 25.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 24.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 24.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 24.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 24.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 24.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 24.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 24.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 24.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 24.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 23.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 23.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 23.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 23.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 23.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 23.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 23.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 23.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 23.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 23.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 22.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 22.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 22.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 22.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 22.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 22.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 22.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 22.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 22.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 22.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 22.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 21.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 20.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 20.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 20.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 20.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 20.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 20.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 20.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 20.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 20.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 19.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 19.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 19.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 19.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 19.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 19.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 19.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 19.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 19.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 19.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 18.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 18.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 18.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 18.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 18.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 18.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 18.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 18.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 18.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 18.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 17.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 17.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 17.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 17.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 17.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 17.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 17.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 16.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 16.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 16.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 16.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 16.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 16.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 16.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 16.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 16.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 16.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 16.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 15.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 15.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 15.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 15.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 15.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 15.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 15.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 15.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 14.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 14.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 14.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 14.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 14.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 13.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 13.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 13.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 13.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 13.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 13.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 13.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 13.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 12.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 12.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 12.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 12.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 12.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 12.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 12.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 12.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 11.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 11.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 11.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 10.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 10.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 10.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 10.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 10.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 9.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 9.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 9.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 8.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 8.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 8.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 8.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 8.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 7.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 7.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 6.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 6.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 5.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 4.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 3.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.9
FF:10164-103B2 76 years, female 11.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 7.5
Sample A Female 17.8
Sample B Female 20.8
Sample C Male 13.3
Sample D Male 7.5

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