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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

95.915
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:107.7 nTPM
GTEx:101.4 nTPM
FANTOM5:182.3 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039176Antibody CAB072836Antibody CAB080075
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumHigh






HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA039176
Hippocampal formation mean intensity 95.915
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 49.084
Molecular layer of the dentate gyrus 33.962
Granular dentate gyrus 95.399
CA1 - oriens layer 34.280
CA1 - pyramidal layer 82.032
CA1 - radiatum layer 40.623
CA2 - oriens layer 31.823
CA2 - pyramidal layer 62.150
CA2 - radiatum layer 40.612
CA3 - oriens layer 38.391
CA3 - pyramidal layer 81.533
CA3 - radiatum layer 45.152
Stratum lucidum 46.496
Lacunosum moleculare 37.749
Subiculum 92.089

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.7
Sample id Sample description nTPM
Hippocampus
nTPM: 107.7
1898 Male, age 80, left hemisphere 142.9
2621 Female, age 67, right hemisphere 121.1
1855 Male, age 76, left hemisphere 105.7
2148 Female, age 91, left hemisphere 95.3
2529 Female, age 94, left hemisphere 91.4
1911 Female, age 85, right hemisphere 89.6

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 101.4
Samples: 197

Max nTPM: 213.6
Min nTPM: 33.3
Std nTPM: 39.2
Median nTPM: 96.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 213.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 209.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 200.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 197.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 197.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 194.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 194.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 189.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 185.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 178.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 176.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 174.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 173.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 171.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 171.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 168.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 163.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 159.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 158.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 157.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 156.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 152.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 149.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 149.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 146.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 143.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 143.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 142.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 141.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 141.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 140.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 138.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 138.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 137.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 136.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 136.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 136.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 136.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 136.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 135.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 133.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 131.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 131.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 130.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 129.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 129.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 128.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 128.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 127.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 126.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 124.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 124.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 122.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 122.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 122.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 121.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 120.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 120.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 118.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 118.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 117.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 117.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 117.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 115.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 114.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 113.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 112.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 112.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 110.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 110.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 109.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 109.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 109.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 109.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 108.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 108.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 107.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 107.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 107.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 106.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 106.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 106.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 105.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 105.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 105.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 105.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 105.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 104.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 104.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 103.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 103.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 102.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 102.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 99.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 99.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 98.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 98.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 96.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 96.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 96.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 96.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 94.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 93.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 93.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 93.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 93.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 91.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 91.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 90.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 90.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 89.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 89.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 88.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 88.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 85.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 85.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 85.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 84.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 83.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 83.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 83.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 81.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 81.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 81.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 81.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 80.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 79.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 78.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 78.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 78.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 78.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 77.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 77.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 77.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 77.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 75.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 75.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 75.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 74.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 73.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 73.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 73.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 73.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 71.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 71.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 70.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 70.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 69.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 69.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 69.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 68.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 68.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 68.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 68.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 66.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 66.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 66.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 66.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 65.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 64.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 64.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 63.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 63.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 62.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 62.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 61.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 61.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 60.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 59.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 58.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 58.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 58.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 57.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 57.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 56.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 53.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 53.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 53.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 53.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 53.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 52.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 52.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 52.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 51.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 50.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 50.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 49.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 49.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 49.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 48.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 47.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 45.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 44.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 41.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 39.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 33.3
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

182.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 182.3
FF:10169-103B7 60 years, female 243.0
FF:10153-102I9 76 years, female 121.7

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