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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:91.0 nTPM
FANTOM5:150.7 Scaled Tags Per Million
Pig:88.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039426Antibody HPA039685
Glial cells MediumLow
Neuronal cells MediumHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 91.0
Samples: 246

Max nTPM: 231.7
Min nTPM: 29.2
Std nTPM: 35.9
Median nTPM: 83.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 231.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 182.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 180.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 176.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 172.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 172.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 172.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 171.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 165.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 165.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 164.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 162.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 161.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 159.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 157.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 155.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 154.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 150.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 147.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 144.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 144.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 144.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 143.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 142.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 142.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 140.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 139.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 139.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 138.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 136.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 136.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 136.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 135.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 134.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 133.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 131.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 130.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 127.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 127.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 122.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 121.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 121.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 121.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 121.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 120.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 120.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 120.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 119.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 119.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 119.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 119.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 119.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 118.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 118.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 118.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 117.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 117.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 116.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 116.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 116.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 115.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 115.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 114.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 114.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 114.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 113.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 113.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 112.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 112.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 112.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 112.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 110.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 109.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 107.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 106.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 106.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 106.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 105.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 104.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 104.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 103.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 103.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 103.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 101.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 101.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 101.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 100.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 99.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 98.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 98.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 97.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 96.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 96.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 95.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 95.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 95.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 95.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 94.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 94.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 92.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 92.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 92.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 91.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 90.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 90.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 89.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 89.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 89.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 89.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 88.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 88.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 87.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 87.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 86.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 84.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 84.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 83.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 82.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 82.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 82.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 81.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 81.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 81.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 80.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 80.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 80.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 80.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 80.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 80.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 78.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 78.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 77.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 77.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 76.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 76.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 76.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 75.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 75.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 74.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 74.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 73.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 73.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 73.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 73.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 72.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 71.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 71.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 71.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 71.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 70.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 70.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 70.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 69.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 69.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 68.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 66.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 66.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 66.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 65.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 65.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 65.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 65.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 65.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 63.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 62.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 62.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 62.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 62.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 61.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 61.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 61.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 61.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 61.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 60.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 60.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 60.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 60.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 59.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 59.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 59.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 59.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 58.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 58.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 57.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 57.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 57.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 56.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 56.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 56.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 56.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 56.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 56.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 55.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 55.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 55.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 54.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 54.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 53.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 53.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 53.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 53.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 52.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 52.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 51.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 50.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 50.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 50.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 50.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 49.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 49.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 48.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 48.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 47.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 47.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 46.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 46.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 45.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 45.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 45.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 45.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 45.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 45.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 44.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 44.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 44.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 43.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 43.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 42.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 42.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 32.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 29.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

150.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 150.7
FF:10164-103B2 76 years, female 150.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.1
Pig sample Sample description nTPM
Caudate
nTPM: 88.1
Samples: 4

Max nTPM: 103.7
Min nTPM: 71.2
Sample A Female 71.2
Sample B Female 94.2
Sample C Male 103.7
Sample D Male 83.2

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