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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:315.8 nTPM
FANTOM5:226.5 Scaled Tags Per Million
Pig:350.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB008713Antibody CAB080246
Glial cells MediumLow
Neuronal cells HighLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

315.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 315.8
Samples: 246

Max nTPM: 659.7
Min nTPM: 155.9
Std nTPM: 75.1
Median nTPM: 303.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 659.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 645.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 601.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 561.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 539.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 523.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 521.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 484.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 475.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 472.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 466.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 457.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 445.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 445.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 444.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 435.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 433.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 429.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 429.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 423.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 419.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 409.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 401.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 399.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 398.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 397.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 393.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 393.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 391.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 391.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 390.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 385.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 381.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 381.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 381.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 380.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 379.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 379.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 378.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 378.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 377.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 374.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 374.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 372.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 371.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 370.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 366.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 365.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 365.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 363.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 362.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 361.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 357.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 356.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 356.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 354.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 354.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 354.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 353.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 352.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 351.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 351.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 351.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 350.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 346.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 346.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 342.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 342.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 342.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 341.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 340.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 339.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 339.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 338.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 336.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 335.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 334.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 334.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 332.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 332.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 331.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 330.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 330.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 328.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 328.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 327.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 326.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 326.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 326.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 324.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 323.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 323.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 321.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 320.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 319.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 319.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 319.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 318.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 318.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 317.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 317.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 317.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 316.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 315.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 315.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 315.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 312.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 312.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 312.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 312.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 311.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 311.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 311.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 310.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 310.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 307.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 307.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 307.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 307.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 307.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 307.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 306.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 303.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 303.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 303.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 303.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 302.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 301.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 300.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 300.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 299.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 298.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 298.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 297.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 296.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 296.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 295.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 295.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 295.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 294.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 294.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 294.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 293.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 293.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 291.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 290.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 289.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 288.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 286.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 286.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 285.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 285.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 284.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 284.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 284.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 284.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 283.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 282.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 282.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 281.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 280.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 279.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 279.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 278.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 278.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 278.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 278.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 277.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 277.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 277.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 277.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 276.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 276.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 276.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 276.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 275.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 274.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 274.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 272.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 272.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 272.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 271.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 270.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 269.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 269.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 267.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 265.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 265.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 264.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 264.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 264.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 263.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 263.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 263.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 260.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 260.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 259.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 259.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 258.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 257.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 257.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 256.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 256.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 256.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 255.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 254.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 254.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 253.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 251.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 250.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 249.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 249.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 249.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 249.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 249.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 246.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 245.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 244.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 243.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 243.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 241.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 241.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 240.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 240.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 239.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 237.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 237.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 233.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 230.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 229.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 225.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 225.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 223.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 220.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 216.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 213.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 211.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 207.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 204.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 196.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 188.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 175.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 171.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 165.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 155.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

226.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 226.5
FF:10164-103B2 76 years, female 226.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

350.4
Pig sample Sample description nTPM
Caudate
nTPM: 350.4
Samples: 4

Max nTPM: 437.9
Min nTPM: 293.1
Sample A Female 293.1
Sample B Female 348.0
Sample C Male 437.9
Sample D Male 322.5

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