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DDIT4
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:80.2 nTPM
FANTOM5:85.3 Scaled Tags Per Million
Pig:20.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA034507Antibody HPA034508
Glial cells MediumMedium
Neuronal cells LowMedium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 80.2
Samples: 246

Max nTPM: 529.3
Min nTPM: 12.8
Std nTPM: 59.2
Median nTPM: 61.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 529.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 395.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 300.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 250.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 224.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 196.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 193.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 193.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 187.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 184.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 183.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 183.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 182.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 179.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 178.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 173.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 170.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 168.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 167.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 163.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 162.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 161.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 160.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 159.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 154.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 153.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 152.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 150.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 148.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 144.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 143.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 141.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 140.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 140.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 140.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 139.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 138.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 136.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 133.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 130.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 122.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 121.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 119.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 118.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 118.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 115.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 115.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 110.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 108.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 107.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 106.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 106.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 106.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 104.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 101.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 101.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 100.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 99.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 97.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 97.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 97.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 96.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 95.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 94.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 94.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 92.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 92.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 91.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 91.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 90.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 90.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 90.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 89.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 89.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 89.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 87.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 87.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 85.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 85.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 84.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 83.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 81.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 80.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 80.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 79.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 78.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 77.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 77.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 76.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 75.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 75.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 74.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 74.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 73.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 72.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 72.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 72.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 71.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 71.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 71.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 71.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 70.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 70.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 70.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 68.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 67.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 67.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 66.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 66.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 65.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 65.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 64.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 63.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 63.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 62.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 62.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 62.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 61.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 61.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 61.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 61.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 61.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 60.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 60.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 60.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 59.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 59.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 59.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 59.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 59.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 58.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 58.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 57.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 57.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 57.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 57.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 56.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 56.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 55.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 54.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 54.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 54.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 54.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 53.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 52.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 52.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 52.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 52.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 52.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 52.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 51.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 51.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 51.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 50.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 50.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 50.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 49.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 49.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 49.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 49.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 49.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 48.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 48.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 48.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 48.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 48.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 48.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 48.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 47.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 46.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 46.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 45.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 45.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 45.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 45.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 45.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 44.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 44.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 44.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 44.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 43.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 43.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 42.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 42.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 42.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 42.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 42.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 41.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 41.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 39.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 39.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 39.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 38.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 38.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 38.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 38.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 36.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 36.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 36.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 36.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 36.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 35.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 35.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 33.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 32.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 32.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 32.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 32.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 31.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 31.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 31.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 30.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 30.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 29.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 29.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 29.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 29.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 29.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 28.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 28.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 28.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 27.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 27.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 27.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 26.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 26.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 26.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 25.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 25.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 24.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 23.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 23.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 23.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 23.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 22.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 18.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 16.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 12.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.3
FF:10164-103B2 76 years, female 85.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.8
Pig sample Sample description nTPM
Caudate
nTPM: 20.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 15.1
Sample A Female 19.4
Sample B Female 23.6
Sample C Male 25.0
Sample D Male 15.1

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