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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:531.9 nTPM
FANTOM5:102.5 Scaled Tags Per Million
Pig:105.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042575
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

531.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 531.9
Samples: 246

Max nTPM: 2043.3
Min nTPM: 59.7
Std nTPM: 329.4
Median nTPM: 430.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2043.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1975.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1779.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1689.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1453.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1445.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1385.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1337.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1320.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1282.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1234.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1211.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1151.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1134.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1093.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1086.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1070.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1065.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1026.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1023.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1021.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1017.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 987.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 986.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 971.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 935.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 934.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 925.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 916.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 909.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 899.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 890.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 858.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 846.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 845.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 839.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 827.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 811.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 808.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 799.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 797.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 792.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 792.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 784.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 777.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 777.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 771.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 767.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 762.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 758.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 756.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 750.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 747.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 744.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 711.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 708.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 697.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 697.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 692.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 687.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 686.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 681.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 670.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 652.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 651.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 644.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 640.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 639.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 635.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 628.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 625.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 621.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 618.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 616.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 616.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 605.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 605.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 604.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 602.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 597.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 596.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 594.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 591.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 583.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 581.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 578.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 573.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 570.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 555.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 549.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 539.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 528.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 526.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 526.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 521.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 518.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 513.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 511.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 507.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 506.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 505.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 503.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 502.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 500.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 499.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 499.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 492.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 490.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 489.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 487.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 477.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 470.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 469.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 468.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 460.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 459.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 454.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 450.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 446.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 441.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 441.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 435.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 431.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 430.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 428.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 425.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 425.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 424.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 423.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 422.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 421.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 415.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 414.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 413.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 411.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 407.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 399.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 398.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 398.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 397.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 395.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 388.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 386.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 386.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 383.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 382.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 380.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 377.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 372.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 372.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 364.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 364.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 360.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 360.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 359.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 358.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 358.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 352.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 349.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 349.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 348.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 348.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 346.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 346.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 346.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 346.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 343.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 340.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 339.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 337.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 336.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 335.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 334.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 333.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 333.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 325.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 325.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 324.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 322.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 321.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 319.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 317.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 317.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 316.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 311.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 309.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 308.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 305.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 303.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 302.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 298.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 293.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 291.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 290.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 288.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 284.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 284.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 276.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 273.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 273.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 272.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 269.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 264.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 263.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 258.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 254.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 253.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 252.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 251.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 250.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 242.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 237.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 235.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 233.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 233.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 231.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 228.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 228.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 225.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 218.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 213.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 213.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 211.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 210.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 203.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 201.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 201.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 199.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 199.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 198.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 195.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 190.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 190.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 184.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 177.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 170.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 163.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 155.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 148.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 145.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 145.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 134.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 133.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 123.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 105.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 102.5
FF:10164-103B2 76 years, female 102.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.1
Pig sample Sample description nTPM
Caudate
nTPM: 105.2
Samples: 4

Max nTPM: 129.4
Min nTPM: 82.6
Sample A Female 82.6
Sample B Female 116.6
Sample C Male 129.4
Sample D Male 92.0

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